miRNA display CGI


Results 121 - 140 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 70039 0.7 0.866721
Target:  5'- cGGCGGCgggggCGAGGGggcccgcggcGCGCGCGAGCUcCg -3'
miRNA:   3'- aCUGCCG-----GCUCUU----------CGUGUGCUUGAaG- -5'
23576 3' -52.6 NC_005261.1 + 77144 0.7 0.866721
Target:  5'- cGGCGGCCGAGcuGCcCGUGAGCg-- -3'
miRNA:   3'- aCUGCCGGCUCuuCGuGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 84878 0.7 0.833262
Target:  5'- cGGCGGCCGA-AAGCGCggcggggGCGGGCg-- -3'
miRNA:   3'- aCUGCCGGCUcUUCGUG-------UGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 82318 0.71 0.82546
Target:  5'- cGGCGGCUGcggcuggaAGAAGCACaccggagggagGCGAuCUUCa -3'
miRNA:   3'- aCUGCCGGC--------UCUUCGUG-----------UGCUuGAAG- -5'
23576 3' -52.6 NC_005261.1 + 27665 0.71 0.82546
Target:  5'- cGugGGCCGuGGAGCGCGgGuguGCg-- -3'
miRNA:   3'- aCugCCGGCuCUUCGUGUgCu--UGaag -5'
23576 3' -52.6 NC_005261.1 + 122489 0.72 0.769881
Target:  5'- aGGCGGUCGGccuGCGCGCGGACg-- -3'
miRNA:   3'- aCUGCCGGCUcuuCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 54655 0.72 0.779528
Target:  5'- cUGGCGGCCGcGGgcGC-CGCGGGCa-- -3'
miRNA:   3'- -ACUGCCGGC-UCuuCGuGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 5844 0.71 0.798391
Target:  5'- cGGCGGCCucgGGGAacAGCGcCGCGAGCg-- -3'
miRNA:   3'- aCUGCCGG---CUCU--UCGU-GUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 8949 0.71 0.798391
Target:  5'- gGGCGGgCGGGGcGGCGCGgGGGCUUg -3'
miRNA:   3'- aCUGCCgGCUCU-UCGUGUgCUUGAAg -5'
23576 3' -52.6 NC_005261.1 + 37155 0.71 0.802089
Target:  5'- aGGCGGCCGcgggcguggugcuggGGcuGCGCGCGGACg-- -3'
miRNA:   3'- aCUGCCGGC---------------UCuuCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 8357 0.71 0.806675
Target:  5'- aUGGCGGCCGAGAgcaacaucgugauGGCcgacgucgcgguGCugGAGCg-- -3'
miRNA:   3'- -ACUGCCGGCUCU-------------UCG------------UGugCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 35813 0.71 0.807587
Target:  5'- aGGCGGCCgcgcagcggcagGAGGAGCGCugGcGCg-- -3'
miRNA:   3'- aCUGCCGG------------CUCUUCGUGugCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 15687 0.69 0.874326
Target:  5'- -uGCGGUgGAGAAGUACAUGuACUa- -3'
miRNA:   3'- acUGCCGgCUCUUCGUGUGCuUGAag -5'
23576 3' -52.6 NC_005261.1 + 25064 0.71 0.807587
Target:  5'- aUGACGGCC-AGGAGCAgGCGcuCggCg -3'
miRNA:   3'- -ACUGCCGGcUCUUCGUgUGCuuGaaG- -5'
23576 3' -52.6 NC_005261.1 + 26678 0.71 0.807587
Target:  5'- cGuCGGCCGGGcAGGCgguccGCAUGAACgcgUCg -3'
miRNA:   3'- aCuGCCGGCUC-UUCG-----UGUGCUUGa--AG- -5'
23576 3' -52.6 NC_005261.1 + 50851 0.71 0.807587
Target:  5'- cGACGGCCGAGGAcaucuGCcGCGCGGugggcGCUa- -3'
miRNA:   3'- aCUGCCGGCUCUU-----CG-UGUGCU-----UGAag -5'
23576 3' -52.6 NC_005261.1 + 91024 0.71 0.807587
Target:  5'- cGGCGG-CGAGGAGCGCGacuacuGCUUCc -3'
miRNA:   3'- aCUGCCgGCUCUUCGUGUgcu---UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 30834 0.71 0.816613
Target:  5'- cUGGCGGCCGGGcucuGGCcguucguggACGCGGGCg-- -3'
miRNA:   3'- -ACUGCCGGCUCu---UCG---------UGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 67094 0.71 0.824584
Target:  5'- gGGCGGCgcuUGAGAgcgucguGGCGCGCGGGCg-- -3'
miRNA:   3'- aCUGCCG---GCUCU-------UCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 44412 0.71 0.82546
Target:  5'- cGGCGGCUGcGGcgguggcggcGGCGCGCGGGCggCg -3'
miRNA:   3'- aCUGCCGGCuCU----------UCGUGUGCUUGaaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.