Results 141 - 160 of 352 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23576 | 3' | -52.6 | NC_005261.1 | + | 33899 | 0.7 | 0.858891 |
Target: 5'- cGACGGCCGgccgcuGGAcGCGCGCGuccGCgcgUCu -3' miRNA: 3'- aCUGCCGGC------UCUuCGUGUGCu--UGa--AG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 21534 | 0.7 | 0.850843 |
Target: 5'- cUGGCGGCCGAugagcGAGGCGCucGCGAu---- -3' miRNA: 3'- -ACUGCCGGCU-----CUUCGUG--UGCUugaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 30834 | 0.71 | 0.816613 |
Target: 5'- cUGGCGGCCGGGcucuGGCcguucguggACGCGGGCg-- -3' miRNA: 3'- -ACUGCCGGCUCu---UCG---------UGUGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 91024 | 0.71 | 0.807587 |
Target: 5'- cGGCGG-CGAGGAGCGCGacuacuGCUUCc -3' miRNA: 3'- aCUGCCgGCUCUUCGUGUgcu---UGAAG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 50851 | 0.71 | 0.807587 |
Target: 5'- cGACGGCCGAGGAcaucuGCcGCGCGGugggcGCUa- -3' miRNA: 3'- aCUGCCGGCUCUU-----CG-UGUGCU-----UGAag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 26678 | 0.71 | 0.807587 |
Target: 5'- cGuCGGCCGGGcAGGCgguccGCAUGAACgcgUCg -3' miRNA: 3'- aCuGCCGGCUC-UUCG-----UGUGCUUGa--AG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 25064 | 0.71 | 0.807587 |
Target: 5'- aUGACGGCC-AGGAGCAgGCGcuCggCg -3' miRNA: 3'- -ACUGCCGGcUCUUCGUgUGCuuGaaG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 35813 | 0.71 | 0.807587 |
Target: 5'- aGGCGGCCgcgcagcggcagGAGGAGCGCugGcGCg-- -3' miRNA: 3'- aCUGCCGG------------CUCUUCGUGugCuUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 8357 | 0.71 | 0.806675 |
Target: 5'- aUGGCGGCCGAGAgcaacaucgugauGGCcgacgucgcgguGCugGAGCg-- -3' miRNA: 3'- -ACUGCCGGCUCU-------------UCG------------UGugCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 37155 | 0.71 | 0.802089 |
Target: 5'- aGGCGGCCGcgggcguggugcuggGGcuGCGCGCGGACg-- -3' miRNA: 3'- aCUGCCGGC---------------UCuuCGUGUGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 67094 | 0.71 | 0.824584 |
Target: 5'- gGGCGGCgcuUGAGAgcgucguGGCGCGCGGGCg-- -3' miRNA: 3'- aCUGCCG---GCUCU-------UCGUGUGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 44412 | 0.71 | 0.82546 |
Target: 5'- cGGCGGCUGcGGcgguggcggcGGCGCGCGGGCggCg -3' miRNA: 3'- aCUGCCGGCuCU----------UCGUGUGCUUGaaG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 79115 | 0.7 | 0.850843 |
Target: 5'- cGGUGGCCGGGGAGCuCGCGcGCg-- -3' miRNA: 3'- aCUGCCGGCUCUUCGuGUGCuUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 13963 | 0.7 | 0.850843 |
Target: 5'- -cGCGGCCG---GGCGCGCGGGCggCg -3' miRNA: 3'- acUGCCGGCucuUCGUGUGCUUGaaG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 24975 | 0.7 | 0.842583 |
Target: 5'- cGaACGGCaUGAGcccGCGCGCGAACUUg -3' miRNA: 3'- aC-UGCCG-GCUCuu-CGUGUGCUUGAAg -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 134711 | 0.7 | 0.842583 |
Target: 5'- aGGCGGCCGcc--GCGCugGAGCg-- -3' miRNA: 3'- aCUGCCGGCucuuCGUGugCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 2490 | 0.7 | 0.842583 |
Target: 5'- -cGCGGCUGAGGcgcgccAGCAuCACGAACa-- -3' miRNA: 3'- acUGCCGGCUCU------UCGU-GUGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 84878 | 0.7 | 0.833262 |
Target: 5'- cGGCGGCCGA-AAGCGCggcggggGCGGGCg-- -3' miRNA: 3'- aCUGCCGGCUcUUCGUG-------UGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 82318 | 0.71 | 0.82546 |
Target: 5'- cGGCGGCUGcggcuggaAGAAGCACaccggagggagGCGAuCUUCa -3' miRNA: 3'- aCUGCCGGC--------UCUUCGUG-----------UGCUuGAAG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 27665 | 0.71 | 0.82546 |
Target: 5'- cGugGGCCGuGGAGCGCGgGuguGCg-- -3' miRNA: 3'- aCugCCGGCuCUUCGUGUgCu--UGaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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