miRNA display CGI


Results 81 - 100 of 352 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 85449 0.67 0.955006
Target:  5'- uUGGCGccgcccGCCGAGAAcauCACGCGGuuCUUCa -3'
miRNA:   3'- -ACUGC------CGGCUCUUc--GUGUGCUu-GAAG- -5'
23576 3' -52.6 NC_005261.1 + 125747 0.67 0.950875
Target:  5'- aGGgGGCCGGGGccagGGCugcCGCGGGCUc- -3'
miRNA:   3'- aCUgCCGGCUCU----UCGu--GUGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 49753 0.67 0.946498
Target:  5'- cGACGGUgaugaccgucgUGuAGAucAGCACGCGGACgUCg -3'
miRNA:   3'- aCUGCCG-----------GC-UCU--UCGUGUGCUUGaAG- -5'
23576 3' -52.6 NC_005261.1 + 117369 0.67 0.946046
Target:  5'- ---aGGCCGcccuccuGGAGGCGCGCu-GCUUCg -3'
miRNA:   3'- acugCCGGC-------UCUUCGUGUGcuUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 103869 0.67 0.941871
Target:  5'- cGGCGGCgGGGcGGCGCcgcCGGGCggCg -3'
miRNA:   3'- aCUGCCGgCUCuUCGUGu--GCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 127854 0.68 0.936992
Target:  5'- gGGCGGUCGcGgcGCcaggGCACGAGCgggagUCg -3'
miRNA:   3'- aCUGCCGGCuCuuCG----UGUGCUUGa----AG- -5'
23576 3' -52.6 NC_005261.1 + 35768 0.68 0.93186
Target:  5'- cGGCucgGGCCGAGAcaggaGGCcCGCGGGCg-- -3'
miRNA:   3'- aCUG---CCGGCUCU-----UCGuGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 80059 0.66 0.965636
Target:  5'- cUGGCGGCgggcgCGGGggGCgugggggACGCGGACc-- -3'
miRNA:   3'- -ACUGCCG-----GCUCuuCG-------UGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 1184 0.66 0.965967
Target:  5'- -cGCGGCCGGGGccggggccgGGCgcgGCGCGGACc-- -3'
miRNA:   3'- acUGCCGGCUCU---------UCG---UGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 31469 0.66 0.96854
Target:  5'- cGGCGGCCuGAGuggccgccgguGCGCGgCGGGCUcUCg -3'
miRNA:   3'- aCUGCCGG-CUCuu---------CGUGU-GCUUGA-AG- -5'
23576 3' -52.6 NC_005261.1 + 125367 0.68 0.920831
Target:  5'- cGcCGGgCaGAGggGCGCugGAACg-- -3'
miRNA:   3'- aCuGCCgG-CUCuuCGUGugCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 97420 0.68 0.914934
Target:  5'- gGGCGcGCCGGGccugcccuuGGGCGCGggucUGGGCUUCg -3'
miRNA:   3'- aCUGC-CGGCUC---------UUCGUGU----GCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 36635 0.69 0.908784
Target:  5'- -aACGGCgCGAagccGGCGCGCGGGCUUg -3'
miRNA:   3'- acUGCCG-GCUcu--UCGUGUGCUUGAAg -5'
23576 3' -52.6 NC_005261.1 + 70971 0.69 0.895732
Target:  5'- cGACGGCgaagaaGAGcgcguGGCGCGCGGGCg-- -3'
miRNA:   3'- aCUGCCGg-----CUCu----UCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 17483 0.69 0.888836
Target:  5'- gGGCGcGCCGGGggGUccuagacgcggaGCAUGGGCUc- -3'
miRNA:   3'- aCUGC-CGGCUCuuCG------------UGUGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 122633 0.66 0.974897
Target:  5'- cGGCGaGCgCGAGGcccGGCGCGCGuACg-- -3'
miRNA:   3'- aCUGC-CG-GCUCU---UCGUGUGCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 59508 0.66 0.97409
Target:  5'- cGGCGGUCGcacgcgcgcccuGGAgcAGCcccgccgccaccgcGCGCGGGCUUCu -3'
miRNA:   3'- aCUGCCGGC------------UCU--UCG--------------UGUGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 88548 0.66 0.972135
Target:  5'- aGACGaCCGAGuacccGAGCGCcgGCGAcgcgucccGCUUCg -3'
miRNA:   3'- aCUGCcGGCUC-----UUCGUG--UGCU--------UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 5281 0.66 0.969161
Target:  5'- aUGGcCGGCCGcGguGCGCGCGggUc-- -3'
miRNA:   3'- -ACU-GCCGGCuCuuCGUGUGCuuGaag -5'
23576 3' -52.6 NC_005261.1 + 84955 0.66 0.969161
Target:  5'- cGGCGGCCGccGAGGCgu-CGGGCgcgUCc -3'
miRNA:   3'- aCUGCCGGCu-CUUCGuguGCUUGa--AG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.