miRNA display CGI


Results 101 - 120 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 13122 0.69 0.902382
Target:  5'- cGGCGGCCGcGggGCGCGUGugg-UCg -3'
miRNA:   3'- aCUGCCGGCuCuuCGUGUGCuugaAG- -5'
23576 3' -52.6 NC_005261.1 + 73305 0.69 0.888836
Target:  5'- aGGCGGCCaGGggGUgccggucaaACACGAGggUCa -3'
miRNA:   3'- aCUGCCGGcUCuuCG---------UGUGCUUgaAG- -5'
23576 3' -52.6 NC_005261.1 + 100865 0.69 0.874326
Target:  5'- cGAaGGCCGccAGAAGCGCGCGcAGCcccUCg -3'
miRNA:   3'- aCUgCCGGC--UCUUCGUGUGC-UUGa--AG- -5'
23576 3' -52.6 NC_005261.1 + 14099 0.69 0.874326
Target:  5'- -cGCGGUCGucGAGGCAgACGGGCgUCg -3'
miRNA:   3'- acUGCCGGCu-CUUCGUgUGCUUGaAG- -5'
23576 3' -52.6 NC_005261.1 + 26116 0.7 0.858891
Target:  5'- -aGCGGCCGGGuAAGCAgGCGcGCg-- -3'
miRNA:   3'- acUGCCGGCUC-UUCGUgUGCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 117369 0.67 0.946046
Target:  5'- ---aGGCCGcccuccuGGAGGCGCGCu-GCUUCg -3'
miRNA:   3'- acugCCGGC-------UCUUCGUGUGcuUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 49753 0.67 0.946498
Target:  5'- cGACGGUgaugaccgucgUGuAGAucAGCACGCGGACgUCg -3'
miRNA:   3'- aCUGCCG-----------GC-UCU--UCGUGUGCUUGaAG- -5'
23576 3' -52.6 NC_005261.1 + 122633 0.66 0.974897
Target:  5'- cGGCGaGCgCGAGGcccGGCGCGCGuACg-- -3'
miRNA:   3'- aCUGC-CG-GCUCU---UCGUGUGCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 59508 0.66 0.97409
Target:  5'- cGGCGGUCGcacgcgcgcccuGGAgcAGCcccgccgccaccgcGCGCGGGCUUCu -3'
miRNA:   3'- aCUGCCGGC------------UCU--UCG--------------UGUGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 88548 0.66 0.972135
Target:  5'- aGACGaCCGAGuacccGAGCGCcgGCGAcgcgucccGCUUCg -3'
miRNA:   3'- aCUGCcGGCUC-----UUCGUG--UGCU--------UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 5281 0.66 0.969161
Target:  5'- aUGGcCGGCCGcGguGCGCGCGggUc-- -3'
miRNA:   3'- -ACU-GCCGGCuCuuCGUGUGCuuGaag -5'
23576 3' -52.6 NC_005261.1 + 84955 0.66 0.969161
Target:  5'- cGGCGGCCGccGAGGCgu-CGGGCgcgUCc -3'
miRNA:   3'- aCUGCCGGCu-CUUCGuguGCUUGa--AG- -5'
23576 3' -52.6 NC_005261.1 + 31469 0.66 0.96854
Target:  5'- cGGCGGCCuGAGuggccgccgguGCGCGgCGGGCUcUCg -3'
miRNA:   3'- aCUGCCGG-CUCuu---------CGUGU-GCUUGA-AG- -5'
23576 3' -52.6 NC_005261.1 + 1184 0.66 0.965967
Target:  5'- -cGCGGCCGGGGccggggccgGGCgcgGCGCGGACc-- -3'
miRNA:   3'- acUGCCGGCUCU---------UCG---UGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 80059 0.66 0.965636
Target:  5'- cUGGCGGCgggcgCGGGggGCgugggggACGCGGACc-- -3'
miRNA:   3'- -ACUGCCG-----GCUCuuCG-------UGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 75481 0.67 0.958895
Target:  5'- cGGCGGCgCGGGccGC-UACGAGCg-- -3'
miRNA:   3'- aCUGCCG-GCUCuuCGuGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 132062 0.67 0.958895
Target:  5'- gUGGCGGCCGAGGu---CGCGGccGCcgUCg -3'
miRNA:   3'- -ACUGCCGGCUCUucguGUGCU--UGa-AG- -5'
23576 3' -52.6 NC_005261.1 + 60192 0.67 0.955006
Target:  5'- -cGCGGCgGAGAAguccGCGCGCGcGCUc- -3'
miRNA:   3'- acUGCCGgCUCUU----CGUGUGCuUGAag -5'
23576 3' -52.6 NC_005261.1 + 85449 0.67 0.955006
Target:  5'- uUGGCGccgcccGCCGAGAAcauCACGCGGuuCUUCa -3'
miRNA:   3'- -ACUGC------CGGCUCUUc--GUGUGCUu-GAAG- -5'
23576 3' -52.6 NC_005261.1 + 125747 0.67 0.950875
Target:  5'- aGGgGGCCGGGGccagGGCugcCGCGGGCUc- -3'
miRNA:   3'- aCUgCCGGCUCU----UCGu--GUGCUUGAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.