miRNA display CGI


Results 121 - 140 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 69511 0.66 0.969161
Target:  5'- cGGCGGCgGGcugccGGAGCugGCGCGGGCg-- -3'
miRNA:   3'- aCUGCCGgCU-----CUUCG--UGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 138136 0.66 0.965967
Target:  5'- cGACGGCCGgcgGGAuGGCGCGgGGAg--- -3'
miRNA:   3'- aCUGCCGGC---UCU-UCGUGUgCUUgaag -5'
23576 3' -52.6 NC_005261.1 + 128455 0.69 0.874326
Target:  5'- cGGCGGUCGc-GAGCACgACGAGCa-- -3'
miRNA:   3'- aCUGCCGGCucUUCGUG-UGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 104388 0.69 0.881699
Target:  5'- gGA-GGCCGAGAGGCGCGCc------ -3'
miRNA:   3'- aCUgCCGGCUCUUCGUGUGcuugaag -5'
23576 3' -52.6 NC_005261.1 + 18971 0.69 0.895732
Target:  5'- gUGGCGG-UGGGgcGCGCACGAAagUCa -3'
miRNA:   3'- -ACUGCCgGCUCuuCGUGUGCUUgaAG- -5'
23576 3' -52.6 NC_005261.1 + 38278 0.67 0.958895
Target:  5'- gGGCGGCUGGu--GCACGCGGuGCUg- -3'
miRNA:   3'- aCUGCCGGCUcuuCGUGUGCU-UGAag -5'
23576 3' -52.6 NC_005261.1 + 48347 0.67 0.955006
Target:  5'- cGGCgaGGCCGAGGAGCcgGCuccACUUCg -3'
miRNA:   3'- aCUG--CCGGCUCUUCGugUGcu-UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 50954 0.67 0.955006
Target:  5'- -cGCGGCCGuGGucgacuacGGCGCGCGAAaccUCu -3'
miRNA:   3'- acUGCCGGCuCU--------UCGUGUGCUUga-AG- -5'
23576 3' -52.6 NC_005261.1 + 34349 0.67 0.950875
Target:  5'- gGGCGGCCGAcGggGCcgggcgccGCGCGGcgccGCg-- -3'
miRNA:   3'- aCUGCCGGCU-CuuCG--------UGUGCU----UGaag -5'
23576 3' -52.6 NC_005261.1 + 127383 0.67 0.950448
Target:  5'- uUGGCGGCggCGAGGAgcccggcgcccucGCACACGAGg--- -3'
miRNA:   3'- -ACUGCCG--GCUCUU-------------CGUGUGCUUgaag -5'
23576 3' -52.6 NC_005261.1 + 23005 0.67 0.946498
Target:  5'- gGGgGGCCcGGAGGCGgccCGCGAACg-- -3'
miRNA:   3'- aCUgCCGGcUCUUCGU---GUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 128146 0.67 0.941871
Target:  5'- cGACGGUCGccGggGC-CGCGGGCc-- -3'
miRNA:   3'- aCUGCCGGCu-CuuCGuGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 122056 0.67 0.93995
Target:  5'- gGAUGGCCGAGAucauguacgggucGCGCACGcccGCg-- -3'
miRNA:   3'- aCUGCCGGCUCUu------------CGUGUGCu--UGaag -5'
23576 3' -52.6 NC_005261.1 + 127854 0.68 0.936992
Target:  5'- gGGCGGUCGcGgcGCcaggGCACGAGCgggagUCg -3'
miRNA:   3'- aCUGCCGGCuCuuCG----UGUGCUUGa----AG- -5'
23576 3' -52.6 NC_005261.1 + 40951 0.68 0.93186
Target:  5'- cGugGGCgGAcguaGGGCGCugGAACUc- -3'
miRNA:   3'- aCugCCGgCUc---UUCGUGugCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 121500 0.68 0.931333
Target:  5'- gGGCGGCgGGGcGGGCAUggggccgucgaugGCGAGCUccUCg -3'
miRNA:   3'- aCUGCCGgCUC-UUCGUG-------------UGCUUGA--AG- -5'
23576 3' -52.6 NC_005261.1 + 100269 0.68 0.920831
Target:  5'- cGGCGcGCCGGu-GGCGCACGAAg--- -3'
miRNA:   3'- aCUGC-CGGCUcuUCGUGUGCUUgaag -5'
23576 3' -52.6 NC_005261.1 + 117699 0.68 0.920831
Target:  5'- aGGcCGGCCcuGAGGccGGCGCGCGGGCc-- -3'
miRNA:   3'- aCU-GCCGG--CUCU--UCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 95292 0.68 0.914934
Target:  5'- cUGAUGGCCagcuGGgcGCAgACGGACUg- -3'
miRNA:   3'- -ACUGCCGGc---UCuuCGUgUGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 34195 0.69 0.908784
Target:  5'- gGAgGGCCG-GAGGCAgACGGcGCgUCg -3'
miRNA:   3'- aCUgCCGGCuCUUCGUgUGCU-UGaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.