miRNA display CGI


Results 1 - 20 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 114783 1.1 0.004418
Target:  5'- aUGACGGCCGAGAAGCACACGAACUUCu -3'
miRNA:   3'- -ACUGCCGGCUCUUCGUGUGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 5784 0.89 0.096522
Target:  5'- gGGCGGCCGAGggGCACGCGcuCUUg -3'
miRNA:   3'- aCUGCCGGCUCuuCGUGUGCuuGAAg -5'
23576 3' -52.6 NC_005261.1 + 24123 0.85 0.169383
Target:  5'- cGGCGGCCGAGAGGaACGCGAACa-- -3'
miRNA:   3'- aCUGCCGGCUCUUCgUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 36696 0.82 0.261018
Target:  5'- gUGGCGGCCGAGGcGGCGCGCGAccGCg-- -3'
miRNA:   3'- -ACUGCCGGCUCU-UCGUGUGCU--UGaag -5'
23576 3' -52.6 NC_005261.1 + 4145 0.82 0.267505
Target:  5'- cGGCGcGCCGAGAgcucgcacaugAGcCGCGCGAGCUUCg -3'
miRNA:   3'- aCUGC-CGGCUCU-----------UC-GUGUGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 91550 0.82 0.274122
Target:  5'- gUGGCGGCCGccguGGAGCGCGCGGccaacgcgcggaACUUCg -3'
miRNA:   3'- -ACUGCCGGCu---CUUCGUGUGCU------------UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 44894 0.81 0.309179
Target:  5'- gGAUGGCCGGGgcGUACACGGACc-- -3'
miRNA:   3'- aCUGCCGGCUCuuCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 38939 0.8 0.331804
Target:  5'- cGGCGGCCGGGcgggccgcGGCGCGCGGGCUg- -3'
miRNA:   3'- aCUGCCGGCUCu-------UCGUGUGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 98701 0.8 0.347552
Target:  5'- cUGGCGGCCGcguAGAGGCGCGCGGcccgggccuCUUCg -3'
miRNA:   3'- -ACUGCCGGC---UCUUCGUGUGCUu--------GAAG- -5'
23576 3' -52.6 NC_005261.1 + 88405 0.79 0.380621
Target:  5'- cGACGG-CGAGGAGCACGacaucuUGGACUUCg -3'
miRNA:   3'- aCUGCCgGCUCUUCGUGU------GCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 100684 0.79 0.380621
Target:  5'- gUGGCGGCggCGGGAgcGGCGCGCGGACcUCg -3'
miRNA:   3'- -ACUGCCG--GCUCU--UCGUGUGCUUGaAG- -5'
23576 3' -52.6 NC_005261.1 + 53857 0.79 0.380621
Target:  5'- cGGCGGCCGAGGccgAGCcCGCGGGCggCg -3'
miRNA:   3'- aCUGCCGGCUCU---UCGuGUGCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 64229 0.79 0.397926
Target:  5'- aUGuuGGCCGAGAAGCGgCACGu-CUUCa -3'
miRNA:   3'- -ACugCCGGCUCUUCGU-GUGCuuGAAG- -5'
23576 3' -52.6 NC_005261.1 + 57964 0.79 0.405876
Target:  5'- gGGCGGCCugGAGAcguaccuGGCGCGCGGcgGCUUCg -3'
miRNA:   3'- aCUGCCGG--CUCU-------UCGUGUGCU--UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 34788 0.79 0.406765
Target:  5'- cGGCGGCCGAccgcGAGGCGCGCGcGCg-- -3'
miRNA:   3'- aCUGCCGGCU----CUUCGUGUGCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 136251 0.78 0.415727
Target:  5'- aGAgGGCCGAGAgaaGGCACGCGAGa--- -3'
miRNA:   3'- aCUgCCGGCUCU---UCGUGUGCUUgaag -5'
23576 3' -52.6 NC_005261.1 + 107318 0.78 0.434008
Target:  5'- cGGCGGCCGGGAGGgGC-CGGGCg-- -3'
miRNA:   3'- aCUGCCGGCUCUUCgUGuGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 2801 0.78 0.434008
Target:  5'- cGGCGGCCGGGAGGgGC-CGGGCg-- -3'
miRNA:   3'- aCUGCCGGCUCUUCgUGuGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 127645 0.77 0.46228
Target:  5'- cGGCGgcGCCGGGggGCGCGCGGG-UUCg -3'
miRNA:   3'- aCUGC--CGGCUCuuCGUGUGCUUgAAG- -5'
23576 3' -52.6 NC_005261.1 + 44215 0.77 0.471918
Target:  5'- aGGCGGCCcGGGAGCGCGCGcuGCUg- -3'
miRNA:   3'- aCUGCCGGcUCUUCGUGUGCu-UGAag -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.