Results 1 - 20 of 352 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23576 | 3' | -52.6 | NC_005261.1 | + | 114783 | 1.1 | 0.004418 |
Target: 5'- aUGACGGCCGAGAAGCACACGAACUUCu -3' miRNA: 3'- -ACUGCCGGCUCUUCGUGUGCUUGAAG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 5784 | 0.89 | 0.096522 |
Target: 5'- gGGCGGCCGAGggGCACGCGcuCUUg -3' miRNA: 3'- aCUGCCGGCUCuuCGUGUGCuuGAAg -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 24123 | 0.85 | 0.169383 |
Target: 5'- cGGCGGCCGAGAGGaACGCGAACa-- -3' miRNA: 3'- aCUGCCGGCUCUUCgUGUGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 36696 | 0.82 | 0.261018 |
Target: 5'- gUGGCGGCCGAGGcGGCGCGCGAccGCg-- -3' miRNA: 3'- -ACUGCCGGCUCU-UCGUGUGCU--UGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 4145 | 0.82 | 0.267505 |
Target: 5'- cGGCGcGCCGAGAgcucgcacaugAGcCGCGCGAGCUUCg -3' miRNA: 3'- aCUGC-CGGCUCU-----------UC-GUGUGCUUGAAG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 91550 | 0.82 | 0.274122 |
Target: 5'- gUGGCGGCCGccguGGAGCGCGCGGccaacgcgcggaACUUCg -3' miRNA: 3'- -ACUGCCGGCu---CUUCGUGUGCU------------UGAAG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 44894 | 0.81 | 0.309179 |
Target: 5'- gGAUGGCCGGGgcGUACACGGACc-- -3' miRNA: 3'- aCUGCCGGCUCuuCGUGUGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 38939 | 0.8 | 0.331804 |
Target: 5'- cGGCGGCCGGGcgggccgcGGCGCGCGGGCUg- -3' miRNA: 3'- aCUGCCGGCUCu-------UCGUGUGCUUGAag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 98701 | 0.8 | 0.347552 |
Target: 5'- cUGGCGGCCGcguAGAGGCGCGCGGcccgggccuCUUCg -3' miRNA: 3'- -ACUGCCGGC---UCUUCGUGUGCUu--------GAAG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 88405 | 0.79 | 0.380621 |
Target: 5'- cGACGG-CGAGGAGCACGacaucuUGGACUUCg -3' miRNA: 3'- aCUGCCgGCUCUUCGUGU------GCUUGAAG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 100684 | 0.79 | 0.380621 |
Target: 5'- gUGGCGGCggCGGGAgcGGCGCGCGGACcUCg -3' miRNA: 3'- -ACUGCCG--GCUCU--UCGUGUGCUUGaAG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 53857 | 0.79 | 0.380621 |
Target: 5'- cGGCGGCCGAGGccgAGCcCGCGGGCggCg -3' miRNA: 3'- aCUGCCGGCUCU---UCGuGUGCUUGaaG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 64229 | 0.79 | 0.397926 |
Target: 5'- aUGuuGGCCGAGAAGCGgCACGu-CUUCa -3' miRNA: 3'- -ACugCCGGCUCUUCGU-GUGCuuGAAG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 57964 | 0.79 | 0.405876 |
Target: 5'- gGGCGGCCugGAGAcguaccuGGCGCGCGGcgGCUUCg -3' miRNA: 3'- aCUGCCGG--CUCU-------UCGUGUGCU--UGAAG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 34788 | 0.79 | 0.406765 |
Target: 5'- cGGCGGCCGAccgcGAGGCGCGCGcGCg-- -3' miRNA: 3'- aCUGCCGGCU----CUUCGUGUGCuUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 136251 | 0.78 | 0.415727 |
Target: 5'- aGAgGGCCGAGAgaaGGCACGCGAGa--- -3' miRNA: 3'- aCUgCCGGCUCU---UCGUGUGCUUgaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 107318 | 0.78 | 0.434008 |
Target: 5'- cGGCGGCCGGGAGGgGC-CGGGCg-- -3' miRNA: 3'- aCUGCCGGCUCUUCgUGuGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 2801 | 0.78 | 0.434008 |
Target: 5'- cGGCGGCCGGGAGGgGC-CGGGCg-- -3' miRNA: 3'- aCUGCCGGCUCUUCgUGuGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 127645 | 0.77 | 0.46228 |
Target: 5'- cGGCGgcGCCGGGggGCGCGCGGG-UUCg -3' miRNA: 3'- aCUGC--CGGCUCuuCGUGUGCUUgAAG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 44215 | 0.77 | 0.471918 |
Target: 5'- aGGCGGCCcGGGAGCGCGCGcuGCUg- -3' miRNA: 3'- aCUGCCGGcUCUUCGUGUGCu-UGAag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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