miRNA display CGI


Results 1 - 20 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 465 0.66 0.965967
Target:  5'- cGACGGCCGgcgGGAuGGCGCGgGGAg--- -3'
miRNA:   3'- aCUGCCGGC---UCU-UCGUGUgCUUgaag -5'
23576 3' -52.6 NC_005261.1 + 529 0.72 0.769881
Target:  5'- gGGCGGgCGGGggGCAgGgCGGACggCg -3'
miRNA:   3'- aCUGCCgGCUCuuCGUgU-GCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 1184 0.66 0.965967
Target:  5'- -cGCGGCCGGGGccggggccgGGCgcgGCGCGGACc-- -3'
miRNA:   3'- acUGCCGGCUCU---------UCG---UGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 1723 0.66 0.974897
Target:  5'- cGGCGGCaCGGGcaccgcGGUGCGCGGGCc-- -3'
miRNA:   3'- aCUGCCG-GCUCu-----UCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 2490 0.7 0.842583
Target:  5'- -cGCGGCUGAGGcgcgccAGCAuCACGAACa-- -3'
miRNA:   3'- acUGCCGGCUCU------UCGU-GUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 2628 0.73 0.678374
Target:  5'- gGGCGGCaUGGGGcccAGCACGCGGGCg-- -3'
miRNA:   3'- aCUGCCG-GCUCU---UCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 2801 0.78 0.434008
Target:  5'- cGGCGGCCGGGAGGgGC-CGGGCg-- -3'
miRNA:   3'- aCUGCCGGCUCUUCgUGuGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 3413 0.72 0.769881
Target:  5'- cGGCGGgCUGAaGAGCGCGCGGGCc-- -3'
miRNA:   3'- aCUGCC-GGCUcUUCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 3868 0.67 0.941394
Target:  5'- -cGCGGCCGGcGAGCACggcgcgcagcucgGCGAGCg-- -3'
miRNA:   3'- acUGCCGGCUcUUCGUG-------------UGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 4145 0.82 0.267505
Target:  5'- cGGCGcGCCGAGAgcucgcacaugAGcCGCGCGAGCUUCg -3'
miRNA:   3'- aCUGC-CGGCUCU-----------UC-GUGUGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 4878 0.68 0.93186
Target:  5'- cGACGGCCGccucAGC-CGCGGccgccucgGCUUCg -3'
miRNA:   3'- aCUGCCGGCucu-UCGuGUGCU--------UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 4906 0.67 0.958895
Target:  5'- -cGCGuGCCGgcAGGAGCuGCGCGAGCa-- -3'
miRNA:   3'- acUGC-CGGC--UCUUCG-UGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 5141 0.66 0.972135
Target:  5'- uUGACGGCgGccuugcgcucgaAGAAGCugACGuACUc- -3'
miRNA:   3'- -ACUGCCGgC------------UCUUCGugUGCuUGAag -5'
23576 3' -52.6 NC_005261.1 + 5281 0.66 0.969161
Target:  5'- aUGGcCGGCCGcGguGCGCGCGggUc-- -3'
miRNA:   3'- -ACU-GCCGGCuCuuCGUGUGCuuGaag -5'
23576 3' -52.6 NC_005261.1 + 5784 0.89 0.096522
Target:  5'- gGGCGGCCGAGggGCACGCGcuCUUg -3'
miRNA:   3'- aCUGCCGGCUCuuCGUGUGCuuGAAg -5'
23576 3' -52.6 NC_005261.1 + 5825 0.68 0.936992
Target:  5'- cGGCGGCCGAu--GCGCGcCGggUUa- -3'
miRNA:   3'- aCUGCCGGCUcuuCGUGU-GCuuGAag -5'
23576 3' -52.6 NC_005261.1 + 5844 0.71 0.798391
Target:  5'- cGGCGGCCucgGGGAacAGCGcCGCGAGCg-- -3'
miRNA:   3'- aCUGCCGG---CUCU--UCGU-GUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 5873 0.66 0.972135
Target:  5'- cGACGGa-GAGAGGCugGCuGGCUc- -3'
miRNA:   3'- aCUGCCggCUCUUCGugUGcUUGAag -5'
23576 3' -52.6 NC_005261.1 + 6426 0.67 0.958895
Target:  5'- cGGCGcGCCGucAGGCGCgGCGGGCg-- -3'
miRNA:   3'- aCUGC-CGGCucUUCGUG-UGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 6758 0.66 0.965636
Target:  5'- cGACGGCgcgcucgcggaggCGGGAGGCGCccGCGAggcGCggCg -3'
miRNA:   3'- aCUGCCG-------------GCUCUUCGUG--UGCU---UGaaG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.