Results 1 - 20 of 352 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23576 | 3' | -52.6 | NC_005261.1 | + | 465 | 0.66 | 0.965967 |
Target: 5'- cGACGGCCGgcgGGAuGGCGCGgGGAg--- -3' miRNA: 3'- aCUGCCGGC---UCU-UCGUGUgCUUgaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 529 | 0.72 | 0.769881 |
Target: 5'- gGGCGGgCGGGggGCAgGgCGGACggCg -3' miRNA: 3'- aCUGCCgGCUCuuCGUgU-GCUUGaaG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 1184 | 0.66 | 0.965967 |
Target: 5'- -cGCGGCCGGGGccggggccgGGCgcgGCGCGGACc-- -3' miRNA: 3'- acUGCCGGCUCU---------UCG---UGUGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 1723 | 0.66 | 0.974897 |
Target: 5'- cGGCGGCaCGGGcaccgcGGUGCGCGGGCc-- -3' miRNA: 3'- aCUGCCG-GCUCu-----UCGUGUGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 2490 | 0.7 | 0.842583 |
Target: 5'- -cGCGGCUGAGGcgcgccAGCAuCACGAACa-- -3' miRNA: 3'- acUGCCGGCUCU------UCGU-GUGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 2628 | 0.73 | 0.678374 |
Target: 5'- gGGCGGCaUGGGGcccAGCACGCGGGCg-- -3' miRNA: 3'- aCUGCCG-GCUCU---UCGUGUGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 2801 | 0.78 | 0.434008 |
Target: 5'- cGGCGGCCGGGAGGgGC-CGGGCg-- -3' miRNA: 3'- aCUGCCGGCUCUUCgUGuGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 3413 | 0.72 | 0.769881 |
Target: 5'- cGGCGGgCUGAaGAGCGCGCGGGCc-- -3' miRNA: 3'- aCUGCC-GGCUcUUCGUGUGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 3868 | 0.67 | 0.941394 |
Target: 5'- -cGCGGCCGGcGAGCACggcgcgcagcucgGCGAGCg-- -3' miRNA: 3'- acUGCCGGCUcUUCGUG-------------UGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 4145 | 0.82 | 0.267505 |
Target: 5'- cGGCGcGCCGAGAgcucgcacaugAGcCGCGCGAGCUUCg -3' miRNA: 3'- aCUGC-CGGCUCU-----------UC-GUGUGCUUGAAG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 4878 | 0.68 | 0.93186 |
Target: 5'- cGACGGCCGccucAGC-CGCGGccgccucgGCUUCg -3' miRNA: 3'- aCUGCCGGCucu-UCGuGUGCU--------UGAAG- -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 4906 | 0.67 | 0.958895 |
Target: 5'- -cGCGuGCCGgcAGGAGCuGCGCGAGCa-- -3' miRNA: 3'- acUGC-CGGC--UCUUCG-UGUGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 5141 | 0.66 | 0.972135 |
Target: 5'- uUGACGGCgGccuugcgcucgaAGAAGCugACGuACUc- -3' miRNA: 3'- -ACUGCCGgC------------UCUUCGugUGCuUGAag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 5281 | 0.66 | 0.969161 |
Target: 5'- aUGGcCGGCCGcGguGCGCGCGggUc-- -3' miRNA: 3'- -ACU-GCCGGCuCuuCGUGUGCuuGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 5784 | 0.89 | 0.096522 |
Target: 5'- gGGCGGCCGAGggGCACGCGcuCUUg -3' miRNA: 3'- aCUGCCGGCUCuuCGUGUGCuuGAAg -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 5825 | 0.68 | 0.936992 |
Target: 5'- cGGCGGCCGAu--GCGCGcCGggUUa- -3' miRNA: 3'- aCUGCCGGCUcuuCGUGU-GCuuGAag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 5844 | 0.71 | 0.798391 |
Target: 5'- cGGCGGCCucgGGGAacAGCGcCGCGAGCg-- -3' miRNA: 3'- aCUGCCGG---CUCU--UCGU-GUGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 5873 | 0.66 | 0.972135 |
Target: 5'- cGACGGa-GAGAGGCugGCuGGCUc- -3' miRNA: 3'- aCUGCCggCUCUUCGugUGcUUGAag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 6426 | 0.67 | 0.958895 |
Target: 5'- cGGCGcGCCGucAGGCGCgGCGGGCg-- -3' miRNA: 3'- aCUGC-CGGCucUUCGUG-UGCUUGaag -5' |
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23576 | 3' | -52.6 | NC_005261.1 | + | 6758 | 0.66 | 0.965636 |
Target: 5'- cGACGGCgcgcucgcggaggCGGGAGGCGCccGCGAggcGCggCg -3' miRNA: 3'- aCUGCCG-------------GCUCUUCGUG--UGCU---UGaaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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