miRNA display CGI


Results 1 - 20 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 35708 0.74 0.667872
Target:  5'- aGGCGGCCaAGcuGCACGCGGACc-- -3'
miRNA:   3'- aCUGCCGGcUCuuCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 64765 0.77 0.491492
Target:  5'- -cGCGGCCcagGGGggGCGCGCGGACg-- -3'
miRNA:   3'- acUGCCGG---CUCuuCGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 65211 0.76 0.521529
Target:  5'- cGACGGCUGGGAcGCGCugGggUgggCg -3'
miRNA:   3'- aCUGCCGGCUCUuCGUGugCuuGaa-G- -5'
23576 3' -52.6 NC_005261.1 + 70461 0.76 0.531702
Target:  5'- gGGCGGCCGGGGgcGGCGCcuCGGACggCg -3'
miRNA:   3'- aCUGCCGGCUCU--UCGUGu-GCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 85197 0.75 0.604529
Target:  5'- cGACGGCUGccccggcgccgcGGAAGCGCugGCGAGCUg- -3'
miRNA:   3'- aCUGCCGGC------------UCUUCGUG--UGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 121547 0.74 0.625646
Target:  5'- cGACGGCgCG-GucGCcuACACGGACUUCa -3'
miRNA:   3'- aCUGCCG-GCuCuuCG--UGUGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 47699 0.74 0.636216
Target:  5'- cGGCGGCgGGGAugcGCGCGCGGAUg-- -3'
miRNA:   3'- aCUGCCGgCUCUu--CGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 70925 0.74 0.646783
Target:  5'- cGGCGGCCGAcGGcGGCGCGCGcGCggCg -3'
miRNA:   3'- aCUGCCGGCU-CU-UCGUGUGCuUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 78026 0.74 0.646783
Target:  5'- -cGCGG-CGGGAGcgcGCGCGCGGACUUCu -3'
miRNA:   3'- acUGCCgGCUCUU---CGUGUGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 107318 0.78 0.434008
Target:  5'- cGGCGGCCGGGAGGgGC-CGGGCg-- -3'
miRNA:   3'- aCUGCCGGCUCUUCgUGuGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 34788 0.79 0.406765
Target:  5'- cGGCGGCCGAccgcGAGGCGCGCGcGCg-- -3'
miRNA:   3'- aCUGCCGGCU----CUUCGUGUGCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 57964 0.79 0.405876
Target:  5'- gGGCGGCCugGAGAcguaccuGGCGCGCGGcgGCUUCg -3'
miRNA:   3'- aCUGCCGG--CUCU-------UCGUGUGCU--UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 24123 0.85 0.169383
Target:  5'- cGGCGGCCGAGAGGaACGCGAACa-- -3'
miRNA:   3'- aCUGCCGGCUCUUCgUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 36696 0.82 0.261018
Target:  5'- gUGGCGGCCGAGGcGGCGCGCGAccGCg-- -3'
miRNA:   3'- -ACUGCCGGCUCU-UCGUGUGCU--UGaag -5'
23576 3' -52.6 NC_005261.1 + 4145 0.82 0.267505
Target:  5'- cGGCGcGCCGAGAgcucgcacaugAGcCGCGCGAGCUUCg -3'
miRNA:   3'- aCUGC-CGGCUCU-----------UC-GUGUGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 91550 0.82 0.274122
Target:  5'- gUGGCGGCCGccguGGAGCGCGCGGccaacgcgcggaACUUCg -3'
miRNA:   3'- -ACUGCCGGCu---CUUCGUGUGCU------------UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 98701 0.8 0.347552
Target:  5'- cUGGCGGCCGcguAGAGGCGCGCGGcccgggccuCUUCg -3'
miRNA:   3'- -ACUGCCGGC---UCUUCGUGUGCUu--------GAAG- -5'
23576 3' -52.6 NC_005261.1 + 53857 0.79 0.380621
Target:  5'- cGGCGGCCGAGGccgAGCcCGCGGGCggCg -3'
miRNA:   3'- aCUGCCGGCUCU---UCGuGUGCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 100684 0.79 0.380621
Target:  5'- gUGGCGGCggCGGGAgcGGCGCGCGGACcUCg -3'
miRNA:   3'- -ACUGCCG--GCUCU--UCGUGUGCUUGaAG- -5'
23576 3' -52.6 NC_005261.1 + 64229 0.79 0.397926
Target:  5'- aUGuuGGCCGAGAAGCGgCACGu-CUUCa -3'
miRNA:   3'- -ACugCCGGCUCUUCGU-GUGCuuGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.