miRNA display CGI


Results 21 - 40 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 85940 0.66 0.974897
Target:  5'- aUGGCGGCCaGGgcGC-CGCGGaaGCUg- -3'
miRNA:   3'- -ACUGCCGGcUCuuCGuGUGCU--UGAag -5'
23576 3' -52.6 NC_005261.1 + 125897 0.66 0.974897
Target:  5'- cGGCGGCCGcgccGGccAAGCGCGCGcccgccGGCUa- -3'
miRNA:   3'- aCUGCCGGC----UC--UUCGUGUGC------UUGAag -5'
23576 3' -52.6 NC_005261.1 + 118389 0.66 0.974897
Target:  5'- aGGaaGCCGAGGAcgccgcgcGCGCGCuGAACUUUu -3'
miRNA:   3'- aCUgcCGGCUCUU--------CGUGUG-CUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 59508 0.66 0.97409
Target:  5'- cGGCGGUCGcacgcgcgcccuGGAgcAGCcccgccgccaccgcGCGCGGGCUUCu -3'
miRNA:   3'- aCUGCCGGC------------UCU--UCG--------------UGUGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 120958 0.66 0.972135
Target:  5'- gGGCGGUCG-GggGUGCACucGCUc- -3'
miRNA:   3'- aCUGCCGGCuCuuCGUGUGcuUGAag -5'
23576 3' -52.6 NC_005261.1 + 66690 0.66 0.972135
Target:  5'- cGGCGGCgauCGAGAAggccGCGCucaGCGAGCg-- -3'
miRNA:   3'- aCUGCCG---GCUCUU----CGUG---UGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 5873 0.66 0.972135
Target:  5'- cGACGGa-GAGAGGCugGCuGGCUc- -3'
miRNA:   3'- aCUGCCggCUCUUCGugUGcUUGAag -5'
23576 3' -52.6 NC_005261.1 + 63009 0.66 0.972135
Target:  5'- cGGCGGCCGcGcc-CGCGCGGGCg-- -3'
miRNA:   3'- aCUGCCGGCuCuucGUGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 88548 0.66 0.972135
Target:  5'- aGACGaCCGAGuacccGAGCGCcgGCGAcgcgucccGCUUCg -3'
miRNA:   3'- aCUGCcGGCUC-----UUCGUG--UGCU--------UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 91264 0.66 0.972135
Target:  5'- gGGCGGCgGcAGcGGCgacgGCGCGGACUg- -3'
miRNA:   3'- aCUGCCGgC-UCuUCG----UGUGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 22780 0.66 0.972135
Target:  5'- cGA-GGCgGAGGAGUccggccgcgaGCGCGAGCUc- -3'
miRNA:   3'- aCUgCCGgCUCUUCG----------UGUGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 110390 0.66 0.972135
Target:  5'- cGACGGa-GAGAGGCugGCuGGCUc- -3'
miRNA:   3'- aCUGCCggCUCUUCGugUGcUUGAag -5'
23576 3' -52.6 NC_005261.1 + 5141 0.66 0.972135
Target:  5'- uUGACGGCgGccuugcgcucgaAGAAGCugACGuACUc- -3'
miRNA:   3'- -ACUGCCGgC------------UCUUCGugUGCuUGAag -5'
23576 3' -52.6 NC_005261.1 + 108446 0.66 0.971848
Target:  5'- --cCGGCCGAGcAGCGCgucgucgGCGAGgaUCu -3'
miRNA:   3'- acuGCCGGCUCuUCGUG-------UGCUUgaAG- -5'
23576 3' -52.6 NC_005261.1 + 99306 0.66 0.969161
Target:  5'- cGGCcGCCGGcuuGGCGCGCGGGCcgCg -3'
miRNA:   3'- aCUGcCGGCUcu-UCGUGUGCUUGaaG- -5'
23576 3' -52.6 NC_005261.1 + 97120 0.66 0.969161
Target:  5'- -cGCGGCCG-GAGGCGcCGCGGccacGCUc- -3'
miRNA:   3'- acUGCCGGCuCUUCGU-GUGCU----UGAag -5'
23576 3' -52.6 NC_005261.1 + 45382 0.66 0.969161
Target:  5'- -uGCGGCCGGGcccGGGaGCugGAGCUg- -3'
miRNA:   3'- acUGCCGGCUC---UUCgUGugCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 16261 0.66 0.969161
Target:  5'- gGGCGGCgCuGGAgcgcGGCACgGCGAGCUg- -3'
miRNA:   3'- aCUGCCG-GcUCU----UCGUG-UGCUUGAag -5'
23576 3' -52.6 NC_005261.1 + 109798 0.66 0.969161
Target:  5'- aUGGcCGGCCGcGguGCGCGCGggUc-- -3'
miRNA:   3'- -ACU-GCCGGCuCuuCGUGUGCuuGaag -5'
23576 3' -52.6 NC_005261.1 + 39586 0.66 0.969161
Target:  5'- gGGgGGCCGAGGAGUGgCugGAcgACg-- -3'
miRNA:   3'- aCUgCCGGCUCUUCGU-GugCU--UGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.