miRNA display CGI


Results 21 - 40 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 3' -52.6 NC_005261.1 + 30342 0.66 0.975944
Target:  5'- cUGGCGGCCGcgcucgcggcccugaAGGccGGCGCGcCGGGCg-- -3'
miRNA:   3'- -ACUGCCGGC---------------UCU--UCGUGU-GCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 80059 0.66 0.965636
Target:  5'- cUGGCGGCgggcgCGGGggGCgugggggACGCGGACc-- -3'
miRNA:   3'- -ACUGCCG-----GCUCuuCG-------UGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 14030 0.66 0.965967
Target:  5'- cGAUGGCCaGcGggGCcAUGCGAGCggUCc -3'
miRNA:   3'- aCUGCCGG-CuCuuCG-UGUGCUUGa-AG- -5'
23576 3' -52.6 NC_005261.1 + 84955 0.66 0.969161
Target:  5'- cGGCGGCCGccGAGGCgu-CGGGCgcgUCc -3'
miRNA:   3'- aCUGCCGGCu-CUUCGuguGCUUGa--AG- -5'
23576 3' -52.6 NC_005261.1 + 88548 0.66 0.972135
Target:  5'- aGACGaCCGAGuacccGAGCGCcgGCGAcgcgucccGCUUCg -3'
miRNA:   3'- aCUGCcGGCUC-----UUCGUG--UGCU--------UGAAG- -5'
23576 3' -52.6 NC_005261.1 + 75481 0.67 0.958895
Target:  5'- cGGCGGCgCGGGccGC-UACGAGCg-- -3'
miRNA:   3'- aCUGCCG-GCUCuuCGuGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 39784 0.66 0.962547
Target:  5'- gGACGucGCCGGGggGCgGCGCGGcCg-- -3'
miRNA:   3'- aCUGC--CGGCUCuuCG-UGUGCUuGaag -5'
23576 3' -52.6 NC_005261.1 + 59508 0.66 0.97409
Target:  5'- cGGCGGUCGcacgcgcgcccuGGAgcAGCcccgccgccaccgcGCGCGGGCUUCu -3'
miRNA:   3'- aCUGCCGGC------------UCU--UCG--------------UGUGCUUGAAG- -5'
23576 3' -52.6 NC_005261.1 + 138136 0.66 0.965967
Target:  5'- cGACGGCCGgcgGGAuGGCGCGgGGAg--- -3'
miRNA:   3'- aCUGCCGGC---UCU-UCGUGUgCUUgaag -5'
23576 3' -52.6 NC_005261.1 + 42673 0.66 0.969161
Target:  5'- cGGCGGCCGGGccGC-CGCcGGCa-- -3'
miRNA:   3'- aCUGCCGGCUCuuCGuGUGcUUGaag -5'
23576 3' -52.6 NC_005261.1 + 44030 0.66 0.974897
Target:  5'- gGGCGGCCGccgcgcGGcGGC-CGCGGGCg-- -3'
miRNA:   3'- aCUGCCGGC------UCuUCGuGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 122633 0.66 0.974897
Target:  5'- cGGCGaGCgCGAGGcccGGCGCGCGuACg-- -3'
miRNA:   3'- aCUGC-CG-GCUCU---UCGUGUGCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 132062 0.67 0.958895
Target:  5'- gUGGCGGCCGAGGu---CGCGGccGCcgUCg -3'
miRNA:   3'- -ACUGCCGGCUCUucguGUGCU--UGa-AG- -5'
23576 3' -52.6 NC_005261.1 + 38278 0.67 0.958895
Target:  5'- gGGCGGCUGGu--GCACGCGGuGCUg- -3'
miRNA:   3'- aCUGCCGGCUcuuCGUGUGCU-UGAag -5'
23576 3' -52.6 NC_005261.1 + 465 0.66 0.965967
Target:  5'- cGACGGCCGgcgGGAuGGCGCGgGGAg--- -3'
miRNA:   3'- aCUGCCGGC---UCU-UCGUGUgCUUgaag -5'
23576 3' -52.6 NC_005261.1 + 5281 0.66 0.969161
Target:  5'- aUGGcCGGCCGcGguGCGCGCGggUc-- -3'
miRNA:   3'- -ACU-GCCGGCuCuuCGUGUGCuuGaag -5'
23576 3' -52.6 NC_005261.1 + 108446 0.66 0.971848
Target:  5'- --cCGGCCGAGcAGCGCgucgucgGCGAGgaUCu -3'
miRNA:   3'- acuGCCGGCUCuUCGUG-------UGCUUgaAG- -5'
23576 3' -52.6 NC_005261.1 + 134222 0.66 0.974897
Target:  5'- cGGCGGCCGGcagcgucggcGuGGCGCACGcGCc-- -3'
miRNA:   3'- aCUGCCGGCU----------CuUCGUGUGCuUGaag -5'
23576 3' -52.6 NC_005261.1 + 69511 0.66 0.969161
Target:  5'- cGGCGGCgGGcugccGGAGCugGCGCGGGCg-- -3'
miRNA:   3'- aCUGCCGgCU-----CUUCG--UGUGCUUGaag -5'
23576 3' -52.6 NC_005261.1 + 125468 0.66 0.965967
Target:  5'- gGGC-GCCGAGAAaGC-CGCGGGCg-- -3'
miRNA:   3'- aCUGcCGGCUCUU-CGuGUGCUUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.