miRNA display CGI

Results 61 - 80 of 1223 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23576	5'	-59.1	NC_005261.1	+	80261	0.77	0.224353
	Target:  5'- gCCGCGcGCGCCugCgucgccggcgugcgcACACGGGCGCUGg -3' miRNA:   3'- -GGCGU-CGUGGugGa--------------UGUGCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	34721	0.77	0.229226
	Target:  5'- gCCGCGGaCGCCGCCgucCGC-GGCGCCGa -3' miRNA:   3'- -GGCGUC-GUGGUGGau-GUGcCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	49432	0.77	0.229226
	Target:  5'- gCCGcCGGCGuCCugCUGCGC-GGCGCCGg -3' miRNA:   3'- -GGC-GUCGU-GGugGAUGUGcCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	61170	0.77	0.229226
	Target:  5'- gCGCGGCACCgGCCagGCGCGGuCGCCGa -3' miRNA:   3'- gGCGUCGUGG-UGGa-UGUGCCcGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	63020	0.77	0.229226
	Target:  5'- aCUGCAGCGCCGCCacCGCGGcCGCCa -3' miRNA:   3'- -GGCGUCGUGGUGGauGUGCCcGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	297	0.77	0.234746
	Target:  5'- gCCGCAGcCGCCGCCgcaGC-CGGGC-CCGc -3' miRNA:   3'- -GGCGUC-GUGGUGGa--UGuGCCCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	49634	0.77	0.234746
	Target:  5'- aCCGUGGCGCCGCCggGC-CGGGCcUCGg -3' miRNA:   3'- -GGCGUCGUGGUGGa-UGuGCCCGuGGC- -5'
23576	5'	-59.1	NC_005261.1	+	421	0.77	0.234746
	Target:  5'- cCCGCgAGCACCaggggcggcGCCgGCGCGGGCGgCGg -3' miRNA:   3'- -GGCG-UCGUGG---------UGGaUGUGCCCGUgGC- -5'
23576	5'	-59.1	NC_005261.1	+	138104	0.77	0.234746
	Target:  5'- cCCGCgAGCACCaggggcggcGCCgGCGCGGGCGgCGg -3' miRNA:   3'- -GGCG-UCGUGG---------UGGaUGUGCCCGUgGC- -5'
23576	5'	-59.1	NC_005261.1	+	2784	0.76	0.270233
	Target:  5'- cCCGCAGCgcccgcGCCGCCUGgGCGGcgugcgagcGCACCu -3' miRNA:   3'- -GGCGUCG------UGGUGGAUgUGCC---------CGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	135641	0.76	0.246119
	Target:  5'- aUGC-GCuGCUACCUGCGCGGGCGCgGg -3' miRNA:   3'- gGCGuCG-UGGUGGAUGUGCCCGUGgC- -5'
23576	5'	-59.1	NC_005261.1	+	77965	0.76	0.251975
	Target:  5'- gCGCAGCACCACCUGCccccaGCGcccGUGCCGu -3' miRNA:   3'- gGCGUCGUGGUGGAUG-----UGCc--CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	52008	0.76	0.240376
	Target:  5'- gCUGCGGCACCGgCUGCcccgguuCGGcGCGCCGa -3' miRNA:   3'- -GGCGUCGUGGUgGAUGu------GCC-CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	75336	0.76	0.240376
	Target:  5'- uCCGCcccGCcCCGCCUcGCGCGGGCugCGc -3' miRNA:   3'- -GGCGu--CGuGGUGGA-UGUGCCCGugGC- -5'
23576	5'	-59.1	NC_005261.1	+	13054	0.76	0.240376
	Target:  5'- gCCGCGcGCGCC-CCUGC-CGGGCGCg- -3' miRNA:   3'- -GGCGU-CGUGGuGGAUGuGCCCGUGgc -5'
23576	5'	-59.1	NC_005261.1	+	84520	0.76	0.240376
	Target:  5'- gCCGCAGCugGCCGCg-GCGCGcGGCGCCc -3' miRNA:   3'- -GGCGUCG--UGGUGgaUGUGC-CCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	39970	0.76	0.246119
	Target:  5'- aCGCGcGCGCCGCCUgACGCGccGCACCGg -3' miRNA:   3'- gGCGU-CGUGGUGGA-UGUGCc-CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	56070	0.76	0.246119
	Target:  5'- uCCGCGccGCGCUugCUgGCGCGGGCACgGu -3' miRNA:   3'- -GGCGU--CGUGGugGA-UGUGCCCGUGgC- -5'
23576	5'	-59.1	NC_005261.1	+	60228	0.76	0.25435
	Target:  5'- gCgGCGGCugCugCUgcugcggcaggcacgGCACGGGCGCUGg -3' miRNA:   3'- -GgCGUCGugGugGA---------------UGUGCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	20175	0.76	0.257946
	Target:  5'- gCCGCuGCcgcgGCCGCCaGCGCGGGCgucgcgGCCGg -3' miRNA:   3'- -GGCGuCG----UGGUGGaUGUGCCCG------UGGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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