miRNA display CGI


Results 61 - 80 of 1223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 5' -59.1 NC_005261.1 + 2669 0.66 0.764805
Target:  5'- cCCGCcGCGCUggggACCcg-GCGGcGCGCCGg -3'
miRNA:   3'- -GGCGuCGUGG----UGGaugUGCC-CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 128310 0.66 0.792065
Target:  5'- gCCGCAuaaaaGacaACCaggGCCUGCGgGGGCuCCGa -3'
miRNA:   3'- -GGCGU-----Cg--UGG---UGGAUGUgCCCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 15477 0.66 0.774016
Target:  5'- aCCGCGGCggacacgcGCCGCUcGCuGCGGGCGg-- -3'
miRNA:   3'- -GGCGUCG--------UGGUGGaUG-UGCCCGUggc -5'
23576 5' -59.1 NC_005261.1 + 82584 0.66 0.774016
Target:  5'- gCGCAGCGCguCCUcguuGCGCugguccGGGCGCg- -3'
miRNA:   3'- gGCGUCGUGguGGA----UGUG------CCCGUGgc -5'
23576 5' -59.1 NC_005261.1 + 71777 0.66 0.774016
Target:  5'- aCCGCGGC-CCGCUcGCagcugaGCGcGGC-CCGg -3'
miRNA:   3'- -GGCGUCGuGGUGGaUG------UGC-CCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 27454 0.66 0.792065
Target:  5'- -gGCGGCggGCCGCCccgcgGgGCGGGCAggcccuccCCGg -3'
miRNA:   3'- ggCGUCG--UGGUGGa----UgUGCCCGU--------GGC- -5'
23576 5' -59.1 NC_005261.1 + 91436 0.66 0.791175
Target:  5'- gCCGCGGUgaaCGCgCUGCGCGGcacggccccgcccGCGCCu -3'
miRNA:   3'- -GGCGUCGug-GUG-GAUGUGCC-------------CGUGGc -5'
23576 5' -59.1 NC_005261.1 + 94714 0.66 0.783105
Target:  5'- gCUGgAGCGCCGCUaccuccgGgGCGGGgaCACCGa -3'
miRNA:   3'- -GGCgUCGUGGUGGa------UgUGCCC--GUGGC- -5'
23576 5' -59.1 NC_005261.1 + 105457 0.66 0.780392
Target:  5'- gCGCGGacacgGCCGcCCUcagcuccucggggcGCGCGGGCcCCGa -3'
miRNA:   3'- gGCGUCg----UGGU-GGA--------------UGUGCCCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 118492 0.66 0.783105
Target:  5'- aUGCGGCGCUGCggACcCuGGCGCCGc -3'
miRNA:   3'- gGCGUCGUGGUGgaUGuGcCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 93447 0.66 0.792065
Target:  5'- gCCGUggccAGCACCgGCCccaGCGcGGUGCCGg -3'
miRNA:   3'- -GGCG----UCGUGG-UGGaugUGC-CCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 87405 0.66 0.792065
Target:  5'- cUCGaCGGCGCCGUCgacggGCGCGccggcgaaGGCGCCGa -3'
miRNA:   3'- -GGC-GUCGUGGUGGa----UGUGC--------CCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 95077 0.66 0.764805
Target:  5'- cCCGCgAGCGCgACCgcgACGgCGaGGCcgauGCCGa -3'
miRNA:   3'- -GGCG-UCGUGgUGGa--UGU-GC-CCG----UGGC- -5'
23576 5' -59.1 NC_005261.1 + 99839 0.66 0.755481
Target:  5'- uCCGCccCGCCGCCca-GC-GGCACCGg -3'
miRNA:   3'- -GGCGucGUGGUGGaugUGcCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 43787 0.66 0.755481
Target:  5'- gCGCggagGGCGCCGCgggugaGgGGGCGCCGg -3'
miRNA:   3'- gGCG----UCGUGGUGgaug--UgCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 77332 0.67 0.746053
Target:  5'- uCCGcCGGCGCCGCCccccgccaugaGCGCaGuGCACCa -3'
miRNA:   3'- -GGC-GUCGUGGUGGa----------UGUGcC-CGUGGc -5'
23576 5' -59.1 NC_005261.1 + 53914 0.66 0.755481
Target:  5'- -aGCGGCGCCcgacucaugACCacagcacgaGCGCGGcGCGCCGc -3'
miRNA:   3'- ggCGUCGUGG---------UGGa--------UGUGCC-CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 36586 0.66 0.764805
Target:  5'- cCCGCcGCgGCCACCggGgGgGGGCAgCGc -3'
miRNA:   3'- -GGCGuCG-UGGUGGa-UgUgCCCGUgGC- -5'
23576 5' -59.1 NC_005261.1 + 13323 0.66 0.764805
Target:  5'- aCGCAGCGCCcucgcACUcGCGCGGcCAgCGg -3'
miRNA:   3'- gGCGUCGUGG-----UGGaUGUGCCcGUgGC- -5'
23576 5' -59.1 NC_005261.1 + 88802 0.66 0.764805
Target:  5'- gCGCAGCAggaCGCCggcgGCG-GGGCGgCGg -3'
miRNA:   3'- gGCGUCGUg--GUGGa---UGUgCCCGUgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.