miRNA display CGI


Results 81 - 100 of 1223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 5' -59.1 NC_005261.1 + 20574 0.66 0.780392
Target:  5'- gCGCGGCGgggCGCUUagcgggggggcgcgGCGCGGGC-CCGg -3'
miRNA:   3'- gGCGUCGUg--GUGGA--------------UGUGCCCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 29329 0.66 0.792065
Target:  5'- cCCGC-GCcCCGCUcGCcgGCGGGCAgCGc -3'
miRNA:   3'- -GGCGuCGuGGUGGaUG--UGCCCGUgGC- -5'
23576 5' -59.1 NC_005261.1 + 122577 0.66 0.792065
Target:  5'- cCUGgAGCACCAgCUcccgGC-CGGGCGgCGc -3'
miRNA:   3'- -GGCgUCGUGGUgGA----UGuGCCCGUgGC- -5'
23576 5' -59.1 NC_005261.1 + 7660 0.66 0.792065
Target:  5'- gCGCGGCGgCGCUUccGCccgGCGGGcCGCCc -3'
miRNA:   3'- gGCGUCGUgGUGGA--UG---UGCCC-GUGGc -5'
23576 5' -59.1 NC_005261.1 + 87819 0.66 0.792065
Target:  5'- -aGCGGC-CCGCg-ACGCGgGGCuGCCGg -3'
miRNA:   3'- ggCGUCGuGGUGgaUGUGC-CCG-UGGC- -5'
23576 5' -59.1 NC_005261.1 + 91072 0.66 0.782202
Target:  5'- cCCGCuGGUggucucgGCCGCCgACGCcGGCGCUGu -3'
miRNA:   3'- -GGCG-UCG-------UGGUGGaUGUGcCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 65094 0.66 0.792065
Target:  5'- -gGCGGCGCgaGCCcgGCcCGGGgACCGc -3'
miRNA:   3'- ggCGUCGUGg-UGGa-UGuGCCCgUGGC- -5'
23576 5' -59.1 NC_005261.1 + 76581 0.66 0.774016
Target:  5'- gCCGCucGGCucaguCCGCCgGCggACGGGCGgCCa -3'
miRNA:   3'- -GGCG--UCGu----GGUGGaUG--UGCCCGU-GGc -5'
23576 5' -59.1 NC_005261.1 + 92830 0.66 0.774016
Target:  5'- gCCGCAGCAggcacgaCAgCUGCACgaacaGGGCGgccCCGa -3'
miRNA:   3'- -GGCGUCGUg------GUgGAUGUG-----CCCGU---GGC- -5'
23576 5' -59.1 NC_005261.1 + 39219 0.66 0.764805
Target:  5'- gCCGCcGCGCCGCCgcuCGCGa-CGCUGa -3'
miRNA:   3'- -GGCGuCGUGGUGGau-GUGCccGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 133319 0.66 0.783105
Target:  5'- gCCGCGGCggaggcagccGCCGCCgaaGC-CGaGGCgGCCGc -3'
miRNA:   3'- -GGCGUCG----------UGGUGGa--UGuGC-CCG-UGGC- -5'
23576 5' -59.1 NC_005261.1 + 131971 0.66 0.792065
Target:  5'- -gGCGGCggGCCGCCccgcgGgGCGGGCAggcccuccCCGg -3'
miRNA:   3'- ggCGUCG--UGGUGGa----UgUGCCCGU--------GGC- -5'
23576 5' -59.1 NC_005261.1 + 84086 0.66 0.783105
Target:  5'- cCCGC-GCACgGCCgcgUGCGGcGUGCCGu -3'
miRNA:   3'- -GGCGuCGUGgUGGau-GUGCC-CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 106341 0.66 0.774016
Target:  5'- gCCGCGcGUaaGCgGCCUcgGCGCGcgcgaaGGCGCCGg -3'
miRNA:   3'- -GGCGU-CG--UGgUGGA--UGUGC------CCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 77039 0.66 0.795611
Target:  5'- gCCGCGcGCGCggcccucggcgaccgCGCCUggccggugccGCGCGaGGCGCUGg -3'
miRNA:   3'- -GGCGU-CGUG---------------GUGGA----------UGUGC-CCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 74763 0.66 0.792065
Target:  5'- uCCGCu-CGCCGugcaacCCU-CGCGGGCGCuCGg -3'
miRNA:   3'- -GGCGucGUGGU------GGAuGUGCCCGUG-GC- -5'
23576 5' -59.1 NC_005261.1 + 75582 0.66 0.792065
Target:  5'- gCgGCGGCGCgGCgCU-CGCGcGCGCCGc -3'
miRNA:   3'- -GgCGUCGUGgUG-GAuGUGCcCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 32129 0.66 0.792065
Target:  5'- aCCGCGccGCcaACCGCUggggGCuCGGcGCGCCGc -3'
miRNA:   3'- -GGCGU--CG--UGGUGGa---UGuGCC-CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 87405 0.66 0.792065
Target:  5'- cUCGaCGGCGCCGUCgacggGCGCGccggcgaaGGCGCCGa -3'
miRNA:   3'- -GGC-GUCGUGGUGGa----UGUGC--------CCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 93447 0.66 0.792065
Target:  5'- gCCGUggccAGCACCgGCCccaGCGcGGUGCCGg -3'
miRNA:   3'- -GGCG----UCGUGG-UGGaugUGC-CCGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.