miRNA display CGI


Results 81 - 100 of 1223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 5' -59.1 NC_005261.1 + 56612 0.74 0.33875
Target:  5'- cUCGCGGCGgugcugaacCCGCC---GCGGGCGCCGg -3'
miRNA:   3'- -GGCGUCGU---------GGUGGaugUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 40399 0.74 0.33875
Target:  5'- cCCGCcGCccccguuuuuGCCGCCgucUGCGgGGGCGCCGg -3'
miRNA:   3'- -GGCGuCG----------UGGUGG---AUGUgCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 88933 0.74 0.33875
Target:  5'- gCGCGGCGCuCACCgcCGCGGGCuucugcGCCu -3'
miRNA:   3'- gGCGUCGUG-GUGGauGUGCCCG------UGGc -5'
23576 5' -59.1 NC_005261.1 + 100860 0.74 0.346257
Target:  5'- aCCaCAGCGCCGCCUcGgGCGGcgaGCACCGc -3'
miRNA:   3'- -GGcGUCGUGGUGGA-UgUGCC---CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 62070 0.74 0.348532
Target:  5'- aCUGCAGCgccacggcgucgugcGCCGCCacgACcuccacgACGGGCGCCGg -3'
miRNA:   3'- -GGCGUCG---------------UGGUGGa--UG-------UGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 37516 0.74 0.353882
Target:  5'- gCGCGGCGCgGCCgcgGCuCGGGCGgCGc -3'
miRNA:   3'- gGCGUCGUGgUGGa--UGuGCCCGUgGC- -5'
23576 5' -59.1 NC_005261.1 + 119488 0.74 0.353882
Target:  5'- uCUGCGGgGCCGCUguuUugGGGCGCCc -3'
miRNA:   3'- -GGCGUCgUGGUGGau-GugCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 134496 0.74 0.353882
Target:  5'- gCGguGCGCCGCCgGCGCGuccGGCAgCGg -3'
miRNA:   3'- gGCguCGUGGUGGaUGUGC---CCGUgGC- -5'
23576 5' -59.1 NC_005261.1 + 32865 0.74 0.356193
Target:  5'- cCCGCGcGCGCCGCCUGucacggccugccuCACGgccguggcggugggcGGCGCCGg -3'
miRNA:   3'- -GGCGU-CGUGGUGGAU-------------GUGC---------------CCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 87357 0.73 0.361625
Target:  5'- -aGCAGCGCCAgCgcgGCGaaGGCGCCGa -3'
miRNA:   3'- ggCGUCGUGGUgGa--UGUgcCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 25510 0.73 0.361625
Target:  5'- gCUGCGGacgacgaggaaCGCCAgguCCUGCACGGGCACgGc -3'
miRNA:   3'- -GGCGUC-----------GUGGU---GGAUGUGCCCGUGgC- -5'
23576 5' -59.1 NC_005261.1 + 36443 0.73 0.361625
Target:  5'- gCGCAGCcCCGCCgaggcgGCACGcGCGCUGg -3'
miRNA:   3'- gGCGUCGuGGUGGa-----UGUGCcCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 42499 0.73 0.361625
Target:  5'- gCgGCGGCGCCGCUgagcGCgGCGGGC-CCGa -3'
miRNA:   3'- -GgCGUCGUGGUGGa---UG-UGCCCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 78961 0.73 0.361625
Target:  5'- -gGCGGCGacaCGCCgugcgACGCGuGGCGCCGg -3'
miRNA:   3'- ggCGUCGUg--GUGGa----UGUGC-CCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 80132 0.73 0.361625
Target:  5'- gCGCGGCugguGCCGCCcgaggACGCGGGCcCUGg -3'
miRNA:   3'- gGCGUCG----UGGUGGa----UGUGCCCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 35015 0.73 0.369485
Target:  5'- aCUGCGcGCGCUuCCUGCAgGaGGCGCCGc -3'
miRNA:   3'- -GGCGU-CGUGGuGGAUGUgC-CCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 62918 0.73 0.369485
Target:  5'- uCCGC-GCGCCGCCgacggugGCGCGGuGCGCg- -3'
miRNA:   3'- -GGCGuCGUGGUGGa------UGUGCC-CGUGgc -5'
23576 5' -59.1 NC_005261.1 + 133080 0.73 0.369485
Target:  5'- aCGCGGC-CCGCCgggccgagGCGCGcGaGCGCCGg -3'
miRNA:   3'- gGCGUCGuGGUGGa-------UGUGC-C-CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 43445 0.73 0.377461
Target:  5'- -gGCAGCAgCACCUcgagcuCGCGcGGCGCCa -3'
miRNA:   3'- ggCGUCGUgGUGGAu-----GUGC-CCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 60160 0.73 0.377461
Target:  5'- -gGcCAGCGCCuggGCCgGCGCGGGgGCCGg -3'
miRNA:   3'- ggC-GUCGUGG---UGGaUGUGCCCgUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.