miRNA display CGI

Results 101 - 120 of 1223 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23576	5'	-59.1	NC_005261.1	+	73292	0.66	0.764805
	Target:  5'- gCCGCAcGCGCC-CCUGgGCGGcgagcaggaGCACg- -3' miRNA:   3'- -GGCGU-CGUGGuGGAUgUGCC---------CGUGgc -5'
23576	5'	-59.1	NC_005261.1	+	67331	0.66	0.764805
	Target:  5'- aCGUGGCGCgCAagUGCACGGccauguGCACCGc -3' miRNA:   3'- gGCGUCGUG-GUggAUGUGCC------CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	48155	0.66	0.755481
	Target:  5'- cCCGUcGCugC-CCUcgGCGCccgcgGGGCGCCGc -3' miRNA:   3'- -GGCGuCGugGuGGA--UGUG-----CCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	28992	0.66	0.764805
	Target:  5'- cCCGCAcuGgGCCGCgCUgcagcGCGCGGcGUGCCGc -3' miRNA:   3'- -GGCGU--CgUGGUG-GA-----UGUGCC-CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	90281	0.66	0.764805
	Target:  5'- gCGCAGCgugaACgCGCUcGCGCGcGGCGCgCGg -3' miRNA:   3'- gGCGUCG----UG-GUGGaUGUGC-CCGUG-GC- -5'
23576	5'	-59.1	NC_005261.1	+	52292	0.66	0.755481
	Target:  5'- uCCGCGGCGCCcugGCCgccauccagaGCACGgucgagcaGGcCACCGa -3' miRNA:   3'- -GGCGUCGUGG---UGGa---------UGUGC--------CC-GUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	70760	0.66	0.764805
	Target:  5'- gCCGCGG-GCUuCCUguACGCGGGCgugcgggcggACCGg -3' miRNA:   3'- -GGCGUCgUGGuGGA--UGUGCCCG----------UGGC- -5'
23576	5'	-59.1	NC_005261.1	+	37092	0.66	0.755481
	Target:  5'- gCCGCcGCGCggcaGCCUcGCGCgaggaccacgaGGGCGCCa -3' miRNA:   3'- -GGCGuCGUGg---UGGA-UGUG-----------CCCGUGGc -5'
23576	5'	-59.1	NC_005261.1	+	123037	0.66	0.764805
	Target:  5'- aCCGCgcgauGGCGgCGuuUccCGCGGGCGCCGc -3' miRNA:   3'- -GGCG-----UCGUgGUggAu-GUGCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	65374	0.66	0.764805
	Target:  5'- cCCGCGGU-CCAC--GCcUGGGCGCUGg -3' miRNA:   3'- -GGCGUCGuGGUGgaUGuGCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	83185	0.66	0.764805
	Target:  5'- cUCGcCGGCcCCGCgcagCUGCGCGGG-GCCGg -3' miRNA:   3'- -GGC-GUCGuGGUG----GAUGUGCCCgUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	38106	0.66	0.774016
	Target:  5'- gCgGgGGCugCgGCCgguGCGGGCGCCGc -3' miRNA:   3'- -GgCgUCGugG-UGGaugUGCCCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	92830	0.66	0.774016
	Target:  5'- gCCGCAGCAggcacgaCAgCUGCACgaacaGGGCGgccCCGa -3' miRNA:   3'- -GGCGUCGUg------GUgGAUGUG-----CCCGU---GGC- -5'
23576	5'	-59.1	NC_005261.1	+	19748	0.66	0.770346
	Target:  5'- uCCGCAGCGCCGCaUACcggcagaucuuguaAUGGcaagugucuucuaGCGCCGc -3' miRNA:   3'- -GGCGUCGUGGUGgAUG--------------UGCC-------------CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	13321	0.66	0.764805
	Target:  5'- uCCGCGGCuucCCGCgUggcgGCGgGGGCGgCCa -3' miRNA:   3'- -GGCGUCGu--GGUGgA----UGUgCCCGU-GGc -5'
23576	5'	-59.1	NC_005261.1	+	22702	0.66	0.768503
	Target:  5'- gCCGCcgauGCugCGCUcggugcagcagguggUGCGgGGGCugCGg -3' miRNA:   3'- -GGCGu---CGugGUGG---------------AUGUgCCCGugGC- -5'
23576	5'	-59.1	NC_005261.1	+	13882	0.66	0.755481
	Target:  5'- gCGCAGCaauGCCGCCcAC-UGaGGCGCUGc -3' miRNA:   3'- gGCGUCG---UGGUGGaUGuGC-CCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	107186	0.66	0.764805
	Target:  5'- cCCGCcGCGCUggggACCcg-GCGGcGCGCCGg -3' miRNA:   3'- -GGCGuCGUGG----UGGaugUGCC-CGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	86262	0.66	0.762019
	Target:  5'- gCCGCGGU-CCAgCaGCGCGgcggcgucgucgguGGCGCCGg -3' miRNA:   3'- -GGCGUCGuGGUgGaUGUGC--------------CCGUGGC- -5'
23576	5'	-59.1	NC_005261.1	+	89562	0.66	0.782202
	Target:  5'- cCCGUAGuCGCCguuGCCgcgcgGCucuccggGCGGGgGCCGg -3' miRNA:   3'- -GGCGUC-GUGG---UGGa----UG-------UGCCCgUGGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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