miRNA display CGI


Results 101 - 120 of 1223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23576 5' -59.1 NC_005261.1 + 69948 0.75 0.289541
Target:  5'- cCCGCGGCcggggccCCGCC-GCGCGGGCGCa- -3'
miRNA:   3'- -GGCGUCGu------GGUGGaUGUGCCCGUGgc -5'
23576 5' -59.1 NC_005261.1 + 79704 0.75 0.296213
Target:  5'- gCgGCGGCugggcucgauCCGCCUccuggACGCGGGCGCCa -3'
miRNA:   3'- -GgCGUCGu---------GGUGGA-----UGUGCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 127990 0.75 0.296213
Target:  5'- cCCGCGGCGgCGagUGCGCGGGC-CCGc -3'
miRNA:   3'- -GGCGUCGUgGUggAUGUGCCCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 94587 0.75 0.303004
Target:  5'- -aGCAcGuCACCGCCgcgccACACGGGCGCCc -3'
miRNA:   3'- ggCGU-C-GUGGUGGa----UGUGCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 57435 0.75 0.303004
Target:  5'- gCGgGGCuCUACC-GCACGGGCACCu -3'
miRNA:   3'- gGCgUCGuGGUGGaUGUGCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 107059 0.75 0.303004
Target:  5'- gCCGcCAGCGCCGCg-GCGCuGGGCGCgGg -3'
miRNA:   3'- -GGC-GUCGUGGUGgaUGUG-CCCGUGgC- -5'
23576 5' -59.1 NC_005261.1 + 103772 0.75 0.307829
Target:  5'- -aGCAGCGCCACCcaggcCGCGGGCcgucuucggugugcGCCGu -3'
miRNA:   3'- ggCGUCGUGGUGGau---GUGCCCG--------------UGGC- -5'
23576 5' -59.1 NC_005261.1 + 76041 0.75 0.30232
Target:  5'- cCCGC-GCGCCAUCaGCguggccgGCGGGCGCCa -3'
miRNA:   3'- -GGCGuCGUGGUGGaUG-------UGCCCGUGGc -5'
23576 5' -59.1 NC_005261.1 + 2542 0.75 0.303004
Target:  5'- gCCGcCAGCGCCGCg-GCGCuGGGCGCgGg -3'
miRNA:   3'- -GGC-GUCGUGGUGgaUGUG-CCCGUGgC- -5'
23576 5' -59.1 NC_005261.1 + 71587 0.75 0.298915
Target:  5'- cCCGUAGCcgaucacguaggcccGCCGCCgcggcccggGCGCGGGC-CCGg -3'
miRNA:   3'- -GGCGUCG---------------UGGUGGa--------UGUGCCCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 103963 0.75 0.296213
Target:  5'- aCCGCGGCgGCCGCC-ACACGGaaGCGCUc -3'
miRNA:   3'- -GGCGUCG-UGGUGGaUGUGCC--CGUGGc -5'
23576 5' -59.1 NC_005261.1 + 23473 0.75 0.296213
Target:  5'- cCCGCGGCGgCGagUGCGCGGGC-CCGc -3'
miRNA:   3'- -GGCGUCGUgGUggAUGUGCCCGuGGC- -5'
23576 5' -59.1 NC_005261.1 + 44289 0.75 0.303004
Target:  5'- gCCGcCAGCggcgggccaggGCCGCUgccCGCGGGCGCCGc -3'
miRNA:   3'- -GGC-GUCG-----------UGGUGGau-GUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 113041 0.75 0.282987
Target:  5'- gCCGCGcgcggcguggcGCGCCACCgcuCGCuGGGCAUCGg -3'
miRNA:   3'- -GGCGU-----------CGUGGUGGau-GUG-CCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 85426 0.75 0.289541
Target:  5'- gCGCGcGCGCCGCCUccgACAUGuuGGCGCCGc -3'
miRNA:   3'- gGCGU-CGUGGUGGA---UGUGC--CCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 51413 0.75 0.296213
Target:  5'- cCCGCGcGCccACCGCCUGCugGGccccgggcGCGCCGu -3'
miRNA:   3'- -GGCGU-CG--UGGUGGAUGugCC--------CGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 4522 0.75 0.276551
Target:  5'- cCCGCgcgGGCGCCGCg-GCGaGGGCGCCGg -3'
miRNA:   3'- -GGCG---UCGUGGUGgaUGUgCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 80105 0.75 0.303004
Target:  5'- gCCGCGGUACCGgCU---UGGGCGCCGc -3'
miRNA:   3'- -GGCGUCGUGGUgGAuguGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 69509 0.75 0.296213
Target:  5'- gCCgGCGGCggGCUGCCggagcugGCGCGGGCGCUGg -3'
miRNA:   3'- -GG-CGUCG--UGGUGGa------UGUGCCCGUGGC- -5'
23576 5' -59.1 NC_005261.1 + 104146 0.75 0.282987
Target:  5'- gCCGCcaGGUcgGCCACCgcgccgucCGCGGGCGCCGc -3'
miRNA:   3'- -GGCG--UCG--UGGUGGau------GUGCCCGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.