miRNA display CGI


Results 61 - 80 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23577 3' -53.4 NC_005261.1 + 88863 0.68 0.906427
Target:  5'- cCGCGCCUcgcgggACAGCCUCUcCGUUgcgGUGGu -3'
miRNA:   3'- cGCGUGGG------UGUUGGAGAaGCAG---CACU- -5'
23577 3' -53.4 NC_005261.1 + 89128 0.72 0.759226
Target:  5'- cGCGCGCCggagcagcaCGCGACCUCcugCGaCGUGGa -3'
miRNA:   3'- -CGCGUGG---------GUGUUGGAGaa-GCaGCACU- -5'
23577 3' -53.4 NC_005261.1 + 90871 0.66 0.956863
Target:  5'- cGCGCugguGCCCGuCGGCUUCgacugCGUCGUc- -3'
miRNA:   3'- -CGCG----UGGGU-GUUGGAGaa---GCAGCAcu -5'
23577 3' -53.4 NC_005261.1 + 92204 0.66 0.970397
Target:  5'- gGCGCAgCCGCcgaAGCCggcgUCGUCGg-- -3'
miRNA:   3'- -CGCGUgGGUG---UUGGaga-AGCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 92580 0.68 0.924134
Target:  5'- cGCGCGCCCACGcgcgagcgcaGCCgCUcgCGgcgCGUGc -3'
miRNA:   3'- -CGCGUGGGUGU----------UGGaGAa-GCa--GCACu -5'
23577 3' -53.4 NC_005261.1 + 93590 0.73 0.658062
Target:  5'- cGCGCGCUCgGCGACCUCgcCGUCGc-- -3'
miRNA:   3'- -CGCGUGGG-UGUUGGAGaaGCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 93693 0.68 0.900037
Target:  5'- gGgGCGCCgGCGgguGCCUCUuccuccUCGUCGUc- -3'
miRNA:   3'- -CgCGUGGgUGU---UGGAGA------AGCAGCAcu -5'
23577 3' -53.4 NC_005261.1 + 94613 0.67 0.952911
Target:  5'- cGCGCGCCCucGCcGCCgccggCgccgUCGUCGg-- -3'
miRNA:   3'- -CGCGUGGG--UGuUGGa----Ga---AGCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 98719 0.68 0.918478
Target:  5'- cGCGCgGCCCG-GGCCUCUUCGggCGa-- -3'
miRNA:   3'- -CGCG-UGGGUgUUGGAGAAGCa-GCacu -5'
23577 3' -53.4 NC_005261.1 + 101101 0.68 0.900037
Target:  5'- aGCGCGgCCGCGcgcGCCUUggCGcccUCGUGGu -3'
miRNA:   3'- -CGCGUgGGUGU---UGGAGaaGC---AGCACU- -5'
23577 3' -53.4 NC_005261.1 + 101728 0.68 0.918478
Target:  5'- aGCGCGCCCGCGAUCagggCcUCGcUCGg-- -3'
miRNA:   3'- -CGCGUGGGUGUUGGa---GaAGC-AGCacu -5'
23577 3' -53.4 NC_005261.1 + 103325 0.69 0.879441
Target:  5'- cCGCGCCC-CGACCUCcgCGUCc--- -3'
miRNA:   3'- cGCGUGGGuGUUGGAGaaGCAGcacu -5'
23577 3' -53.4 NC_005261.1 + 105924 0.66 0.963394
Target:  5'- cGCGCGCCCACGccgcgcCCUCcgcgagcgcgcCGUCGaUGGc -3'
miRNA:   3'- -CGCGUGGGUGUu-----GGAGaa---------GCAGC-ACU- -5'
23577 3' -53.4 NC_005261.1 + 106288 0.66 0.96305
Target:  5'- cGUGCaaacGCCguCGACCUCggcgagcaggucuucCGUCGUGAg -3'
miRNA:   3'- -CGCG----UGGguGUUGGAGaa-------------GCAGCACU- -5'
23577 3' -53.4 NC_005261.1 + 108266 0.66 0.956863
Target:  5'- gGCGCACCgCGCcGCCUCUagCGccUCGcGGc -3'
miRNA:   3'- -CGCGUGG-GUGuUGGAGAa-GC--AGCaCU- -5'
23577 3' -53.4 NC_005261.1 + 114452 1.11 0.003851
Target:  5'- uGCGCACCCACAACCUCUUCGUCGUGAc -3'
miRNA:   3'- -CGCGUGGGUGUUGGAGAAGCAGCACU- -5'
23577 3' -53.4 NC_005261.1 + 115367 0.68 0.912575
Target:  5'- uGCGCcUCCACGguuGCCgg--CGUCGUGGu -3'
miRNA:   3'- -CGCGuGGGUGU---UGGagaaGCAGCACU- -5'
23577 3' -53.4 NC_005261.1 + 115872 0.67 0.934707
Target:  5'- gGCGCGCCCgGCAAUCUCccUCGcCGc-- -3'
miRNA:   3'- -CGCGUGGG-UGUUGGAGa-AGCaGCacu -5'
23577 3' -53.4 NC_005261.1 + 115958 0.66 0.96305
Target:  5'- aCGCGCCCAgcACCUCgUccuccgagguguagUCGUCGcUGAc -3'
miRNA:   3'- cGCGUGGGUguUGGAG-A--------------AGCAGC-ACU- -5'
23577 3' -53.4 NC_005261.1 + 117213 0.66 0.960582
Target:  5'- gGCGCGCCCGCuGCCUgggCGcCGa-- -3'
miRNA:   3'- -CGCGUGGGUGuUGGAgaaGCaGCacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.