Results 61 - 80 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23577 | 3' | -53.4 | NC_005261.1 | + | 6640 | 0.7 | 0.848826 |
Target: 5'- cGCGCGCgCGCGuagGCCUCggcCGUCGcGGg -3' miRNA: 3'- -CGCGUGgGUGU---UGGAGaa-GCAGCaCU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 53540 | 0.7 | 0.814969 |
Target: 5'- cGCGUGCCCGCGcGCCggCUUCGU-GUGc -3' miRNA: 3'- -CGCGUGGGUGU-UGGa-GAAGCAgCACu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 57977 | 0.71 | 0.768862 |
Target: 5'- aCGUACCUggcgcGCGGCggCUUCGUCGUGGc -3' miRNA: 3'- cGCGUGGG-----UGUUGgaGAAGCAGCACU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 68875 | 0.72 | 0.759226 |
Target: 5'- aGCGCGCgCGCGGCCgcgUCGUCGc-- -3' miRNA: 3'- -CGCGUGgGUGUUGGagaAGCAGCacu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 29502 | 0.72 | 0.759226 |
Target: 5'- gGCGCcgccgcugGCCCGC-GCgCUCUUCGcCGUGGc -3' miRNA: 3'- -CGCG--------UGGGUGuUG-GAGAAGCaGCACU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 98719 | 0.68 | 0.918478 |
Target: 5'- cGCGCgGCCCG-GGCCUCUUCGggCGa-- -3' miRNA: 3'- -CGCG-UGGGUgUUGGAGAAGCa-GCacu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 51109 | 0.68 | 0.924134 |
Target: 5'- cGCGUACCCGCGGCC-CUUCu------ -3' miRNA: 3'- -CGCGUGGGUGUUGGaGAAGcagcacu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 69290 | 0.68 | 0.924134 |
Target: 5'- cGCGCGCCUcguuCAGCgUC-UCGUCGa-- -3' miRNA: 3'- -CGCGUGGGu---GUUGgAGaAGCAGCacu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 60440 | 0.66 | 0.970397 |
Target: 5'- gGCGCGCCCuCGccgggguaguagGCCUCgUCGUCc--- -3' miRNA: 3'- -CGCGUGGGuGU------------UGGAGaAGCAGcacu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 118993 | 0.66 | 0.970397 |
Target: 5'- aGCGCcCCCGCAGUCUCg-CGggGUGAg -3' miRNA: 3'- -CGCGuGGGUGUUGGAGaaGCagCACU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 88711 | 0.66 | 0.970397 |
Target: 5'- gGCgGCugGCCCGCGACCUUUUCGg----- -3' miRNA: 3'- -CG-CG--UGGGUGUUGGAGAAGCagcacu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 74454 | 0.66 | 0.967344 |
Target: 5'- cGCGCGCgCACGuggACCUCgg---CGUGGg -3' miRNA: 3'- -CGCGUGgGUGU---UGGAGaagcaGCACU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 42159 | 0.66 | 0.964074 |
Target: 5'- cCGCACUCACcugCUCgggCGUCGUGc -3' miRNA: 3'- cGCGUGGGUGuugGAGaa-GCAGCACu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 38190 | 0.66 | 0.960582 |
Target: 5'- cGCGCucgagcugacGCCCGCgGACCU---UGUCGUGGc -3' miRNA: 3'- -CGCG----------UGGGUG-UUGGAgaaGCAGCACU- -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 137106 | 0.66 | 0.960582 |
Target: 5'- cGCGUcCuCCGCGuCCUCcUCGUCGUc- -3' miRNA: 3'- -CGCGuG-GGUGUuGGAGaAGCAGCAcu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 61354 | 0.66 | 0.960582 |
Target: 5'- aGCGUGCCguCGGCCUCcUCGcCGg-- -3' miRNA: 3'- -CGCGUGGguGUUGGAGaAGCaGCacu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 119515 | 0.67 | 0.952911 |
Target: 5'- cCGCGCCCgACGAUCUCUgcuUCGccgaCGUGc -3' miRNA: 3'- cGCGUGGG-UGUUGGAGA---AGCa---GCACu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 79158 | 0.67 | 0.952911 |
Target: 5'- gGCGCACCCGCGcGCgCUCUcCG-CGg-- -3' miRNA: 3'- -CGCGUGGGUGU-UG-GAGAaGCaGCacu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 61771 | 0.67 | 0.948723 |
Target: 5'- cGCGCGCCgGCGccGCCgUCgcCGUCGg-- -3' miRNA: 3'- -CGCGUGGgUGU--UGG-AGaaGCAGCacu -5' |
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23577 | 3' | -53.4 | NC_005261.1 | + | 70583 | 0.67 | 0.939623 |
Target: 5'- cGCGCggacgggcgGCCCGCGuUCUCggCGUaCGUGGu -3' miRNA: 3'- -CGCG---------UGGGUGUuGGAGaaGCA-GCACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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