miRNA display CGI


Results 81 - 96 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23577 3' -53.4 NC_005261.1 + 74454 0.66 0.967344
Target:  5'- cGCGCGCgCACGuggACCUCgg---CGUGGg -3'
miRNA:   3'- -CGCGUGgGUGU---UGGAGaagcaGCACU- -5'
23577 3' -53.4 NC_005261.1 + 88711 0.66 0.970397
Target:  5'- gGCgGCugGCCCGCGACCUUUUCGg----- -3'
miRNA:   3'- -CG-CG--UGGGUGUUGGAGAAGCagcacu -5'
23577 3' -53.4 NC_005261.1 + 118993 0.66 0.970397
Target:  5'- aGCGCcCCCGCAGUCUCg-CGggGUGAg -3'
miRNA:   3'- -CGCGuGGGUGUUGGAGaaGCagCACU- -5'
23577 3' -53.4 NC_005261.1 + 50823 0.66 0.960582
Target:  5'- gGCGCGCCCGuCGACggCgcCGUCGaGAc -3'
miRNA:   3'- -CGCGUGGGU-GUUGgaGaaGCAGCaCU- -5'
23577 3' -53.4 NC_005261.1 + 90871 0.66 0.956863
Target:  5'- cGCGCugguGCCCGuCGGCUUCgacugCGUCGUc- -3'
miRNA:   3'- -CGCG----UGGGU-GUUGGAGaa---GCAGCAcu -5'
23577 3' -53.4 NC_005261.1 + 38892 0.66 0.956863
Target:  5'- cGCGCugCUGCugggcgcGCCgg-UCGUCGUGc -3'
miRNA:   3'- -CGCGugGGUGu------UGGagaAGCAGCACu -5'
23577 3' -53.4 NC_005261.1 + 98719 0.68 0.918478
Target:  5'- cGCGCgGCCCG-GGCCUCUUCGggCGa-- -3'
miRNA:   3'- -CGCG-UGGGUgUUGGAGAAGCa-GCacu -5'
23577 3' -53.4 NC_005261.1 + 51109 0.68 0.924134
Target:  5'- cGCGUACCCGCGGCC-CUUCu------ -3'
miRNA:   3'- -CGCGUGGGUGUUGGaGAAGcagcacu -5'
23577 3' -53.4 NC_005261.1 + 69290 0.68 0.924134
Target:  5'- cGCGCGCCUcguuCAGCgUC-UCGUCGa-- -3'
miRNA:   3'- -CGCGUGGGu---GUUGgAGaAGCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 70583 0.67 0.939623
Target:  5'- cGCGCggacgggcgGCCCGCGuUCUCggCGUaCGUGGu -3'
miRNA:   3'- -CGCG---------UGGGUGUuGGAGaaGCA-GCACU- -5'
23577 3' -53.4 NC_005261.1 + 61771 0.67 0.948723
Target:  5'- cGCGCGCCgGCGccGCCgUCgcCGUCGg-- -3'
miRNA:   3'- -CGCGUGGgUGU--UGG-AGaaGCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 79158 0.67 0.952911
Target:  5'- gGCGCACCCGCGcGCgCUCUcCG-CGg-- -3'
miRNA:   3'- -CGCGUGGGUGU-UG-GAGAaGCaGCacu -5'
23577 3' -53.4 NC_005261.1 + 119515 0.67 0.952911
Target:  5'- cCGCGCCCgACGAUCUCUgcuUCGccgaCGUGc -3'
miRNA:   3'- cGCGUGGG-UGUUGGAGA---AGCa---GCACu -5'
23577 3' -53.4 NC_005261.1 + 47802 0.67 0.952911
Target:  5'- cGCGCGCCCGCccACgUCgaaCGUCGc-- -3'
miRNA:   3'- -CGCGUGGGUGu-UGgAGaa-GCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 4404 0.66 0.956863
Target:  5'- cGCGCACgcggCCGCGcagcGCCUCgUCGcCGUcGAg -3'
miRNA:   3'- -CGCGUG----GGUGU----UGGAGaAGCaGCA-CU- -5'
23577 3' -53.4 NC_005261.1 + 60440 0.66 0.970397
Target:  5'- gGCGCGCCCuCGccgggguaguagGCCUCgUCGUCc--- -3'
miRNA:   3'- -CGCGUGGGuGU------------UGGAGaAGCAGcacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.