miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23577 3' -53.4 NC_005261.1 + 74454 0.66 0.967344
Target:  5'- cGCGCGCgCACGuggACCUCgg---CGUGGg -3'
miRNA:   3'- -CGCGUGgGUGU---UGGAGaagcaGCACU- -5'
23577 3' -53.4 NC_005261.1 + 90871 0.66 0.956863
Target:  5'- cGCGCugguGCCCGuCGGCUUCgacugCGUCGUc- -3'
miRNA:   3'- -CGCG----UGGGU-GUUGGAGaa---GCAGCAcu -5'
23577 3' -53.4 NC_005261.1 + 38190 0.66 0.960582
Target:  5'- cGCGCucgagcugacGCCCGCgGACCU---UGUCGUGGc -3'
miRNA:   3'- -CGCG----------UGGGUG-UUGGAgaaGCAGCACU- -5'
23577 3' -53.4 NC_005261.1 + 42159 0.66 0.964074
Target:  5'- cCGCACUCACcugCUCgggCGUCGUGc -3'
miRNA:   3'- cGCGUGGGUGuugGAGaa-GCAGCACu -5'
23577 3' -53.4 NC_005261.1 + 108266 0.66 0.956863
Target:  5'- gGCGCACCgCGCcGCCUCUagCGccUCGcGGc -3'
miRNA:   3'- -CGCGUGG-GUGuUGGAGAa-GC--AGCaCU- -5'
23577 3' -53.4 NC_005261.1 + 15584 0.66 0.960582
Target:  5'- uCGCGCCCACGuacgcgcgccggGCCUCgcgcUCGcCGUu- -3'
miRNA:   3'- cGCGUGGGUGU------------UGGAGa---AGCaGCAcu -5'
23577 3' -53.4 NC_005261.1 + 50823 0.66 0.960582
Target:  5'- gGCGCGCCCGuCGACggCgcCGUCGaGAc -3'
miRNA:   3'- -CGCGUGGGU-GUUGgaGaaGCAGCaCU- -5'
23577 3' -53.4 NC_005261.1 + 61354 0.66 0.960582
Target:  5'- aGCGUGCCguCGGCCUCcUCGcCGg-- -3'
miRNA:   3'- -CGCGUGGguGUUGGAGaAGCaGCacu -5'
23577 3' -53.4 NC_005261.1 + 137106 0.66 0.960582
Target:  5'- cGCGUcCuCCGCGuCCUCcUCGUCGUc- -3'
miRNA:   3'- -CGCGuG-GGUGUuGGAGaAGCAGCAcu -5'
23577 3' -53.4 NC_005261.1 + 38892 0.66 0.956863
Target:  5'- cGCGCugCUGCugggcgcGCCgg-UCGUCGUGc -3'
miRNA:   3'- -CGCGugGGUGu------UGGagaAGCAGCACu -5'
23577 3' -53.4 NC_005261.1 + 4404 0.66 0.956863
Target:  5'- cGCGCACgcggCCGCGcagcGCCUCgUCGcCGUcGAg -3'
miRNA:   3'- -CGCGUG----GGUGU----UGGAGaAGCaGCA-CU- -5'
23577 3' -53.4 NC_005261.1 + 92204 0.66 0.970397
Target:  5'- gGCGCAgCCGCcgaAGCCggcgUCGUCGg-- -3'
miRNA:   3'- -CGCGUgGGUG---UUGGaga-AGCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 88385 0.66 0.970397
Target:  5'- cGCGCGCCCAagguguACCUCgaCGgCGagGAg -3'
miRNA:   3'- -CGCGUGGGUgu----UGGAGaaGCaGCa-CU- -5'
23577 3' -53.4 NC_005261.1 + 118993 0.66 0.970397
Target:  5'- aGCGCcCCCGCAGUCUCg-CGggGUGAg -3'
miRNA:   3'- -CGCGuGGGUGUUGGAGaaGCagCACU- -5'
23577 3' -53.4 NC_005261.1 + 88711 0.66 0.970397
Target:  5'- gGCgGCugGCCCGCGACCUUUUCGg----- -3'
miRNA:   3'- -CG-CG--UGGGUGUUGGAGAAGCagcacu -5'
23577 3' -53.4 NC_005261.1 + 119659 0.66 0.970397
Target:  5'- gGCGCGCgCCugGAgCUCUgguuccagcgCGUCGg-- -3'
miRNA:   3'- -CGCGUG-GGugUUgGAGAa---------GCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 68812 0.66 0.964074
Target:  5'- cGCGgACCCACAACgC-CUggGcCGUGGc -3'
miRNA:   3'- -CGCgUGGGUGUUG-GaGAagCaGCACU- -5'
23577 3' -53.4 NC_005261.1 + 42111 0.66 0.964074
Target:  5'- uGUGCcgGCCCAgCAGCCcggCcUCGUCGaUGAc -3'
miRNA:   3'- -CGCG--UGGGU-GUUGGa--GaAGCAGC-ACU- -5'
23577 3' -53.4 NC_005261.1 + 105924 0.66 0.963394
Target:  5'- cGCGCGCCCACGccgcgcCCUCcgcgagcgcgcCGUCGaUGGc -3'
miRNA:   3'- -CGCGUGGGUGUu-----GGAGaa---------GCAGC-ACU- -5'
23577 3' -53.4 NC_005261.1 + 60440 0.66 0.970397
Target:  5'- gGCGCGCCCuCGccgggguaguagGCCUCgUCGUCc--- -3'
miRNA:   3'- -CGCGUGGGuGU------------UGGAGaAGCAGcacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.