miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23577 3' -53.4 NC_005261.1 + 114452 1.11 0.003851
Target:  5'- uGCGCACCCACAACCUCUUCGUCGUGAc -3'
miRNA:   3'- -CGCGUGGGUGUUGGAGAAGCAGCACU- -5'
23577 3' -53.4 NC_005261.1 + 127571 0.81 0.285774
Target:  5'- gGCaGCACCCuCAGCUUCUUCGUCGUc- -3'
miRNA:   3'- -CG-CGUGGGuGUUGGAGAAGCAGCAcu -5'
23577 3' -53.4 NC_005261.1 + 23053 0.81 0.285774
Target:  5'- gGCaGCACCCuCAGCUUCUUCGUCGUc- -3'
miRNA:   3'- -CG-CGUGGGuGUUGGAGAAGCAGCAcu -5'
23577 3' -53.4 NC_005261.1 + 15291 0.76 0.494667
Target:  5'- cGCGCGgUCGCGGCCUCcgggUCGUCG-GAg -3'
miRNA:   3'- -CGCGUgGGUGUUGGAGa---AGCAGCaCU- -5'
23577 3' -53.4 NC_005261.1 + 83188 0.76 0.494667
Target:  5'- uGCGCACCCGCAGCUgccgCGUgaCGUGGu -3'
miRNA:   3'- -CGCGUGGGUGUUGGagaaGCA--GCACU- -5'
23577 3' -53.4 NC_005261.1 + 61202 0.75 0.585376
Target:  5'- cCGCGCgCGCGGCCUCggCGUCGgcgagGAg -3'
miRNA:   3'- cGCGUGgGUGUUGGAGaaGCAGCa----CU- -5'
23577 3' -53.4 NC_005261.1 + 51415 0.74 0.604008
Target:  5'- cGCGCGCCCACcGCCUgCUgggccccgggcgCGcCGUGAu -3'
miRNA:   3'- -CGCGUGGGUGuUGGA-GAa-----------GCaGCACU- -5'
23577 3' -53.4 NC_005261.1 + 64563 0.74 0.616471
Target:  5'- cCGCGCCCGC--CCUCcgCGUCGUGc -3'
miRNA:   3'- cGCGUGGGUGuuGGAGaaGCAGCACu -5'
23577 3' -53.4 NC_005261.1 + 93590 0.73 0.658062
Target:  5'- cGCGCGCUCgGCGACCUCgcCGUCGc-- -3'
miRNA:   3'- -CGCGUGGG-UGUUGGAGaaGCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 119055 0.73 0.678763
Target:  5'- cUGCGCCCgGCAGCUgCUUCG-CGUGAu -3'
miRNA:   3'- cGCGUGGG-UGUUGGaGAAGCaGCACU- -5'
23577 3' -53.4 NC_005261.1 + 61161 0.73 0.689058
Target:  5'- gGCGcCGCCUcgACGGCCUCUUCGUggcCGUcGAg -3'
miRNA:   3'- -CGC-GUGGG--UGUUGGAGAAGCA---GCA-CU- -5'
23577 3' -53.4 NC_005261.1 + 79034 0.72 0.719615
Target:  5'- gGgGCGCCCGCGcCCUUggCGUCGUc- -3'
miRNA:   3'- -CgCGUGGGUGUuGGAGaaGCAGCAcu -5'
23577 3' -53.4 NC_005261.1 + 120598 0.72 0.719615
Target:  5'- cCGuCGCCUGCGGCCUCggCGcCGUGGg -3'
miRNA:   3'- cGC-GUGGGUGUUGGAGaaGCaGCACU- -5'
23577 3' -53.4 NC_005261.1 + 62376 0.72 0.719615
Target:  5'- cGCGCGCCUGCGGCagcggCacCGUCGUGGg -3'
miRNA:   3'- -CGCGUGGGUGUUGga---GaaGCAGCACU- -5'
23577 3' -53.4 NC_005261.1 + 75669 0.72 0.729658
Target:  5'- cGCGCGCgCAgAACCUCUUCcUCGccGAg -3'
miRNA:   3'- -CGCGUGgGUgUUGGAGAAGcAGCa-CU- -5'
23577 3' -53.4 NC_005261.1 + 29502 0.72 0.759226
Target:  5'- gGCGCcgccgcugGCCCGC-GCgCUCUUCGcCGUGGc -3'
miRNA:   3'- -CGCG--------UGGGUGuUG-GAGAAGCaGCACU- -5'
23577 3' -53.4 NC_005261.1 + 89128 0.72 0.759226
Target:  5'- cGCGCGCCggagcagcaCGCGACCUCcugCGaCGUGGa -3'
miRNA:   3'- -CGCGUGG---------GUGUUGGAGaa-GCaGCACU- -5'
23577 3' -53.4 NC_005261.1 + 68875 0.72 0.759226
Target:  5'- aGCGCGCgCGCGGCCgcgUCGUCGc-- -3'
miRNA:   3'- -CGCGUGgGUGUUGGagaAGCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 43250 0.71 0.768862
Target:  5'- gGCGCGCgCGgGGCCUacgCGUCGUGc -3'
miRNA:   3'- -CGCGUGgGUgUUGGAgaaGCAGCACu -5'
23577 3' -53.4 NC_005261.1 + 57977 0.71 0.768862
Target:  5'- aCGUACCUggcgcGCGGCggCUUCGUCGUGGc -3'
miRNA:   3'- cGCGUGGG-----UGUUGgaGAAGCAGCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.