miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23577 3' -53.4 NC_005261.1 + 3749 0.66 0.956863
Target:  5'- gGCGCACCgCGCcGCCUCUagCGccUCGcGGc -3'
miRNA:   3'- -CGCGUGG-GUGuUGGAGAa-GC--AGCaCU- -5'
23577 3' -53.4 NC_005261.1 + 4404 0.66 0.956863
Target:  5'- cGCGCACgcggCCGCGcagcGCCUCgUCGcCGUcGAg -3'
miRNA:   3'- -CGCGUG----GGUGU----UGGAGaAGCaGCA-CU- -5'
23577 3' -53.4 NC_005261.1 + 6640 0.7 0.848826
Target:  5'- cGCGCGCgCGCGuagGCCUCggcCGUCGcGGg -3'
miRNA:   3'- -CGCGUGgGUGU---UGGAGaa-GCAGCaCU- -5'
23577 3' -53.4 NC_005261.1 + 15291 0.76 0.494667
Target:  5'- cGCGCGgUCGCGGCCUCcgggUCGUCG-GAg -3'
miRNA:   3'- -CGCGUgGGUGUUGGAGa---AGCAGCaCU- -5'
23577 3' -53.4 NC_005261.1 + 15584 0.66 0.960582
Target:  5'- uCGCGCCCACGuacgcgcgccggGCCUCgcgcUCGcCGUu- -3'
miRNA:   3'- cGCGUGGGUGU------------UGGAGa---AGCaGCAcu -5'
23577 3' -53.4 NC_005261.1 + 20300 0.68 0.900037
Target:  5'- cGCGCACgggCCGCAGCCggcCUUCGUUc--- -3'
miRNA:   3'- -CGCGUG---GGUGUUGGa--GAAGCAGcacu -5'
23577 3' -53.4 NC_005261.1 + 22122 0.71 0.778373
Target:  5'- aGCGCuCCUACuACCcgaUCUUCGUCGcgGAc -3'
miRNA:   3'- -CGCGuGGGUGuUGG---AGAAGCAGCa-CU- -5'
23577 3' -53.4 NC_005261.1 + 23053 0.81 0.285774
Target:  5'- gGCaGCACCCuCAGCUUCUUCGUCGUc- -3'
miRNA:   3'- -CG-CGUGGGuGUUGGAGAAGCAGCAcu -5'
23577 3' -53.4 NC_005261.1 + 29502 0.72 0.759226
Target:  5'- gGCGCcgccgcugGCCCGC-GCgCUCUUCGcCGUGGc -3'
miRNA:   3'- -CGCG--------UGGGUGuUG-GAGAAGCaGCACU- -5'
23577 3' -53.4 NC_005261.1 + 32589 0.66 0.960582
Target:  5'- cGCGUcCuCCGCGuCCUCcUCGUCGUc- -3'
miRNA:   3'- -CGCGuG-GGUGUuGGAGaAGCAGCAcu -5'
23577 3' -53.4 NC_005261.1 + 36667 0.69 0.864566
Target:  5'- cGCGCGCCgagCGCAuCCUCggcgagGUCGUGGc -3'
miRNA:   3'- -CGCGUGG---GUGUuGGAGaag---CAGCACU- -5'
23577 3' -53.4 NC_005261.1 + 36794 0.7 0.832273
Target:  5'- aGCGCuggaCCGCGccGCCUCggcggccgaCGUCGUGAc -3'
miRNA:   3'- -CGCGug--GGUGU--UGGAGaa-------GCAGCACU- -5'
23577 3' -53.4 NC_005261.1 + 37925 0.69 0.889315
Target:  5'- aGCGCGCCCGCGACgCggaCUUUGgggccuucugccgcuUCGUGc -3'
miRNA:   3'- -CGCGUGGGUGUUG-Ga--GAAGC---------------AGCACu -5'
23577 3' -53.4 NC_005261.1 + 38061 0.68 0.918478
Target:  5'- cGgGCagGCCCACGGCCUggcCUUCaG-CGUGAa -3'
miRNA:   3'- -CgCG--UGGGUGUUGGA---GAAG-CaGCACU- -5'
23577 3' -53.4 NC_005261.1 + 38190 0.66 0.960582
Target:  5'- cGCGCucgagcugacGCCCGCgGACCU---UGUCGUGGc -3'
miRNA:   3'- -CGCG----------UGGGUG-UUGGAgaaGCAGCACU- -5'
23577 3' -53.4 NC_005261.1 + 38892 0.66 0.956863
Target:  5'- cGCGCugCUGCugggcgcGCCgg-UCGUCGUGc -3'
miRNA:   3'- -CGCGugGGUGu------UGGagaAGCAGCACu -5'
23577 3' -53.4 NC_005261.1 + 42111 0.66 0.964074
Target:  5'- uGUGCcgGCCCAgCAGCCcggCcUCGUCGaUGAc -3'
miRNA:   3'- -CGCG--UGGGU-GUUGGa--GaAGCAGC-ACU- -5'
23577 3' -53.4 NC_005261.1 + 42159 0.66 0.964074
Target:  5'- cCGCACUCACcugCUCgggCGUCGUGc -3'
miRNA:   3'- cGCGUGGGUGuugGAGaa-GCAGCACu -5'
23577 3' -53.4 NC_005261.1 + 43250 0.71 0.768862
Target:  5'- gGCGCGCgCGgGGCCUacgCGUCGUGc -3'
miRNA:   3'- -CGCGUGgGUgUUGGAgaaGCAGCACu -5'
23577 3' -53.4 NC_005261.1 + 47377 0.66 0.960582
Target:  5'- aGCGCGCgCACAACCg--UCGgggCGg-- -3'
miRNA:   3'- -CGCGUGgGUGUUGGagaAGCa--GCacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.