miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23577 3' -53.4 NC_005261.1 + 115872 0.67 0.934707
Target:  5'- gGCGCGCCCgGCAAUCUCccUCGcCGc-- -3'
miRNA:   3'- -CGCGUGGG-UGUUGGAGa-AGCaGCacu -5'
23577 3' -53.4 NC_005261.1 + 68306 0.67 0.929544
Target:  5'- cGCGgACCUcuGCGGCCgCUUCGaCGUGc -3'
miRNA:   3'- -CGCgUGGG--UGUUGGaGAAGCaGCACu -5'
23577 3' -53.4 NC_005261.1 + 73964 0.68 0.924134
Target:  5'- gGCGCGCCCGgGccgucuGCCUCaUCGUgGagcUGAa -3'
miRNA:   3'- -CGCGUGGGUgU------UGGAGaAGCAgC---ACU- -5'
23577 3' -53.4 NC_005261.1 + 69290 0.68 0.924134
Target:  5'- cGCGCGCCUcguuCAGCgUC-UCGUCGa-- -3'
miRNA:   3'- -CGCGUGGGu---GUUGgAGaAGCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 92580 0.68 0.924134
Target:  5'- cGCGCGCCCACGcgcgagcgcaGCCgCUcgCGgcgCGUGc -3'
miRNA:   3'- -CGCGUGGGUGU----------UGGaGAa-GCa--GCACu -5'
23577 3' -53.4 NC_005261.1 + 51109 0.68 0.924134
Target:  5'- cGCGUACCCGCGGCC-CUUCu------ -3'
miRNA:   3'- -CGCGUGGGUGUUGGaGAAGcagcacu -5'
23577 3' -53.4 NC_005261.1 + 98719 0.68 0.918478
Target:  5'- cGCGCgGCCCG-GGCCUCUUCGggCGa-- -3'
miRNA:   3'- -CGCG-UGGGUgUUGGAGAAGCa-GCacu -5'
23577 3' -53.4 NC_005261.1 + 38061 0.68 0.918478
Target:  5'- cGgGCagGCCCACGGCCUggcCUUCaG-CGUGAa -3'
miRNA:   3'- -CgCG--UGGGUGUUGGA---GAAG-CaGCACU- -5'
23577 3' -53.4 NC_005261.1 + 101728 0.68 0.918478
Target:  5'- aGCGCGCCCGCGAUCagggCcUCGcUCGg-- -3'
miRNA:   3'- -CGCGUGGGUGUUGGa---GaAGC-AGCacu -5'
23577 3' -53.4 NC_005261.1 + 132472 0.68 0.918478
Target:  5'- cCGCGCCgGCAgcGCCUCgcCGUCcUGGg -3'
miRNA:   3'- cGCGUGGgUGU--UGGAGaaGCAGcACU- -5'
23577 3' -53.4 NC_005261.1 + 115367 0.68 0.912575
Target:  5'- uGCGCcUCCACGguuGCCgg--CGUCGUGGu -3'
miRNA:   3'- -CGCGuGGGUGU---UGGagaaGCAGCACU- -5'
23577 3' -53.4 NC_005261.1 + 72588 0.68 0.910756
Target:  5'- cGCGCGCCagagGCGagaggcggagugguGCCUCUUCGgcgCGUa- -3'
miRNA:   3'- -CGCGUGGg---UGU--------------UGGAGAAGCa--GCAcu -5'
23577 3' -53.4 NC_005261.1 + 88863 0.68 0.906427
Target:  5'- cCGCGCCUcgcgggACAGCCUCUcCGUUgcgGUGGu -3'
miRNA:   3'- cGCGUGGG------UGUUGGAGAaGCAG---CACU- -5'
23577 3' -53.4 NC_005261.1 + 101101 0.68 0.900037
Target:  5'- aGCGCGgCCGCGcgcGCCUUggCGcccUCGUGGu -3'
miRNA:   3'- -CGCGUgGGUGU---UGGAGaaGC---AGCACU- -5'
23577 3' -53.4 NC_005261.1 + 20300 0.68 0.900037
Target:  5'- cGCGCACgggCCGCAGCCggcCUUCGUUc--- -3'
miRNA:   3'- -CGCGUG---GGUGUUGGa--GAAGCAGcacu -5'
23577 3' -53.4 NC_005261.1 + 132707 0.68 0.900037
Target:  5'- cGCGCcgaaGCCgGCGGCCUCgcCGcCGUGc -3'
miRNA:   3'- -CGCG----UGGgUGUUGGAGaaGCaGCACu -5'
23577 3' -53.4 NC_005261.1 + 93693 0.68 0.900037
Target:  5'- gGgGCGCCgGCGgguGCCUCUuccuccUCGUCGUc- -3'
miRNA:   3'- -CgCGUGGgUGU---UGGAGA------AGCAGCAcu -5'
23577 3' -53.4 NC_005261.1 + 37925 0.69 0.889315
Target:  5'- aGCGCGCCCGCGACgCggaCUUUGgggccuucugccgcuUCGUGc -3'
miRNA:   3'- -CGCGUGGGUGUUG-Ga--GAAGC---------------AGCACu -5'
23577 3' -53.4 NC_005261.1 + 133150 0.69 0.88654
Target:  5'- uGCGCGCUCGCcGCCgUCggCGUCGc-- -3'
miRNA:   3'- -CGCGUGGGUGuUGG-AGaaGCAGCacu -5'
23577 3' -53.4 NC_005261.1 + 66101 0.69 0.88654
Target:  5'- uCGCACCCGgGG-CUCUUCGggGUGGc -3'
miRNA:   3'- cGCGUGGGUgUUgGAGAAGCagCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.