Results 1 - 20 of 180 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23577 | 5' | -54.2 | NC_005261.1 | + | 93044 | 0.66 | 0.936484 |
Target: 5'- gGCCGGCauGGCCUCAcacUCGGC-GCGGUa- -3' miRNA: 3'- -UGGUUG--CUGGAGU---AGUCGgCGCUAcu -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 75015 | 0.66 | 0.945923 |
Target: 5'- gGCCAAgGACCgcugCAUgAGCCG-GcUGAu -3' miRNA: 3'- -UGGUUgCUGGa---GUAgUCGGCgCuACU- -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 77935 | 0.66 | 0.945923 |
Target: 5'- aGCCGACuGCCUgCG--GGCCGCGggGGc -3' miRNA: 3'- -UGGUUGcUGGA-GUagUCGGCGCuaCU- -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 134560 | 0.66 | 0.941327 |
Target: 5'- gGCC-GCGGCCUgc-CGGCCGCGGc-- -3' miRNA: 3'- -UGGuUGCUGGAguaGUCGGCGCUacu -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 82970 | 0.66 | 0.931394 |
Target: 5'- cGCCAgggggcGCaGACCUCcucgcggCGGCUGCGGUGc -3' miRNA: 3'- -UGGU------UG-CUGGAGua-----GUCGGCGCUACu -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 9402 | 0.66 | 0.936484 |
Target: 5'- gGCCAGCcGCgCgagCGUCAGCCGCa---- -3' miRNA: 3'- -UGGUUGcUG-Ga--GUAGUCGGCGcuacu -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 84459 | 0.66 | 0.931394 |
Target: 5'- -gCGACGACCcggUCGUUuGCCGCGcgGc -3' miRNA: 3'- ugGUUGCUGG---AGUAGuCGGCGCuaCu -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 42946 | 0.66 | 0.931394 |
Target: 5'- cCCAGCuGGCC--AUCAGCCGCaaGAUGu -3' miRNA: 3'- uGGUUG-CUGGagUAGUCGGCG--CUACu -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 103945 | 0.66 | 0.936484 |
Target: 5'- cCCGGCGuCCcCGcCGGCCGCcGUGAg -3' miRNA: 3'- uGGUUGCuGGaGUaGUCGGCGcUACU- -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 37863 | 0.66 | 0.926057 |
Target: 5'- --aGGCGGCCUCgGUC-GCCGCcGUGAa -3' miRNA: 3'- uggUUGCUGGAG-UAGuCGGCGcUACU- -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 35282 | 0.66 | 0.936484 |
Target: 5'- cGCCcGCGGCCgccgCcgCAGCgGCGgcGGc -3' miRNA: 3'- -UGGuUGCUGGa---GuaGUCGgCGCuaCU- -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 37129 | 0.66 | 0.936484 |
Target: 5'- cGCCAaggcgcgcGCGGCCgcgcugCAggCGGCCGCGGg-- -3' miRNA: 3'- -UGGU--------UGCUGGa-----GUa-GUCGGCGCUacu -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 25082 | 0.66 | 0.945923 |
Target: 5'- cGCuCGGCGAUCUCcacguUCAGCCGCc---- -3' miRNA: 3'- -UG-GUUGCUGGAGu----AGUCGGCGcuacu -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 6157 | 0.66 | 0.941327 |
Target: 5'- -gCAGCGGCgaCggCGGCCGCGAc-- -3' miRNA: 3'- ugGUUGCUGgaGuaGUCGGCGCUacu -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 22369 | 0.66 | 0.945923 |
Target: 5'- uGCCgGGCGcGCCUCGgcgggGGCCGCGcgGGc -3' miRNA: 3'- -UGG-UUGC-UGGAGUag---UCGGCGCuaCU- -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 39494 | 0.66 | 0.931394 |
Target: 5'- gGCCAACGcCCgcg-CGGCCGCG-UGc -3' miRNA: 3'- -UGGUUGCuGGaguaGUCGGCGCuACu -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 96612 | 0.66 | 0.945923 |
Target: 5'- cGCCGAgGGCCg---CAGCCGCuuuGUGGu -3' miRNA: 3'- -UGGUUgCUGGaguaGUCGGCGc--UACU- -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 93976 | 0.66 | 0.941327 |
Target: 5'- cCCcGCGcGCCgcggCGUCGGCCGCGcgcUGGg -3' miRNA: 3'- uGGuUGC-UGGa---GUAGUCGGCGCu--ACU- -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 113877 | 0.66 | 0.945475 |
Target: 5'- cGCCGACGAuCCcCGggAGCCGCauugcgaGGUGAg -3' miRNA: 3'- -UGGUUGCU-GGaGUagUCGGCG-------CUACU- -5' |
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23577 | 5' | -54.2 | NC_005261.1 | + | 19797 | 0.66 | 0.936484 |
Target: 5'- cGCCGcgGCGGCgUCcgCGGCgGCGAc-- -3' miRNA: 3'- -UGGU--UGCUGgAGuaGUCGgCGCUacu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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