miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23577 5' -54.2 NC_005261.1 + 114486 1.09 0.003817
Target:  5'- aACCAACGACCUCAUCAGCCGCGAUGAg -3'
miRNA:   3'- -UGGUUGCUGGAGUAGUCGGCGCUACU- -5'
23577 5' -54.2 NC_005261.1 + 102622 0.76 0.439676
Target:  5'- cGCCAGCGGCCUC---GGCCGCGGc-- -3'
miRNA:   3'- -UGGUUGCUGGAGuagUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 28490 0.75 0.496766
Target:  5'- gACCuguACGACCUCAUCgAGuCCGCGGa-- -3'
miRNA:   3'- -UGGu--UGCUGGAGUAG-UC-GGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 133007 0.75 0.496766
Target:  5'- gACCuguACGACCUCAUCgAGuCCGCGGa-- -3'
miRNA:   3'- -UGGu--UGCUGGAGUAG-UC-GGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 95058 0.74 0.55696
Target:  5'- cGCCGGCGGCgCcgUAUCGcGCCGCGAUGu -3'
miRNA:   3'- -UGGUUGCUG-Ga-GUAGU-CGGCGCUACu -5'
23577 5' -54.2 NC_005261.1 + 28197 0.74 0.567216
Target:  5'- aGCCGGCGGCCUCGccgccgCuGCCGCGGc-- -3'
miRNA:   3'- -UGGUUGCUGGAGUa-----GuCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 74830 0.74 0.567216
Target:  5'- cGCCGACGACCUCAUguucgacaCGGCCaggGCGAc-- -3'
miRNA:   3'- -UGGUUGCUGGAGUA--------GUCGG---CGCUacu -5'
23577 5' -54.2 NC_005261.1 + 132715 0.73 0.59824
Target:  5'- aGCCGGCGGCCUCGcCGccguGCCGCGGc-- -3'
miRNA:   3'- -UGGUUGCUGGAGUaGU----CGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 22055 0.73 0.59824
Target:  5'- cCCAGCGGCgUCGgggacgCGGCCGCGAc-- -3'
miRNA:   3'- uGGUUGCUGgAGUa-----GUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 84628 0.73 0.608643
Target:  5'- gGCC-ACGGCCUCGUCGGuCCGC--UGGg -3'
miRNA:   3'- -UGGuUGCUGGAGUAGUC-GGCGcuACU- -5'
23577 5' -54.2 NC_005261.1 + 4873 0.73 0.629496
Target:  5'- gGCCAcgACGGCCgCcUCAGCCGCGGc-- -3'
miRNA:   3'- -UGGU--UGCUGGaGuAGUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 109390 0.73 0.629496
Target:  5'- gGCCAcgACGGCCgCcUCAGCCGCGGc-- -3'
miRNA:   3'- -UGGU--UGCUGGaGuAGUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 31466 0.72 0.66077
Target:  5'- cGCCGGCGGCCUgAgUGGCCGcCGGUGc -3'
miRNA:   3'- -UGGUUGCUGGAgUaGUCGGC-GCUACu -5'
23577 5' -54.2 NC_005261.1 + 16113 0.72 0.66077
Target:  5'- gGCCAcgcacGCGAUCaCcgCGGCCGCGAUGc -3'
miRNA:   3'- -UGGU-----UGCUGGaGuaGUCGGCGCUACu -5'
23577 5' -54.2 NC_005261.1 + 135983 0.72 0.66077
Target:  5'- cGCCGGCGGCCUgAgUGGCCGcCGGUGc -3'
miRNA:   3'- -UGGUUGCUGGAgUaGUCGGC-GCUACu -5'
23577 5' -54.2 NC_005261.1 + 104903 0.72 0.671158
Target:  5'- cGCCcgGACGcCCUCcagGGCCGCGGUGAu -3'
miRNA:   3'- -UGG--UUGCuGGAGuagUCGGCGCUACU- -5'
23577 5' -54.2 NC_005261.1 + 47460 0.72 0.671158
Target:  5'- cGCCGcaGCGGCCUCggCGGCCuCGggGAa -3'
miRNA:   3'- -UGGU--UGCUGGAGuaGUCGGcGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 83355 0.72 0.671158
Target:  5'- cGCCGACG-CCaUCAUcCGGCCGUGcgGGu -3'
miRNA:   3'- -UGGUUGCuGG-AGUA-GUCGGCGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 122373 0.71 0.702088
Target:  5'- aGCCAuugccGCGACCUCGUCcucuagcgcGCuCGCGAUGc -3'
miRNA:   3'- -UGGU-----UGCUGGAGUAGu--------CG-GCGCUACu -5'
23577 5' -54.2 NC_005261.1 + 118396 0.71 0.702088
Target:  5'- cGCUGGCGGCCgcgggcgCcgCAGCCGCGcUGGc -3'
miRNA:   3'- -UGGUUGCUGGa------GuaGUCGGCGCuACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.