miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23577 5' -54.2 NC_005261.1 + 18241 0.69 0.808784
Target:  5'- aGCCGGCGcCCUCcagcGUCGGCCGgGGc-- -3'
miRNA:   3'- -UGGUUGCuGGAG----UAGUCGGCgCUacu -5'
23577 5' -54.2 NC_005261.1 + 53277 0.71 0.742424
Target:  5'- cCCGACG-CCUCggCGGCCGcCGAgGAg -3'
miRNA:   3'- uGGUUGCuGGAGuaGUCGGC-GCUaCU- -5'
23577 5' -54.2 NC_005261.1 + 77387 0.71 0.742424
Target:  5'- cCCGgcgcGCGACCUCG-CcGCCGcCGAUGAu -3'
miRNA:   3'- uGGU----UGCUGGAGUaGuCGGC-GCUACU- -5'
23577 5' -54.2 NC_005261.1 + 47496 0.71 0.752282
Target:  5'- cGCCAGCG-CCUCAggcgCGGCCcaGCGGUc- -3'
miRNA:   3'- -UGGUUGCuGGAGUa---GUCGG--CGCUAcu -5'
23577 5' -54.2 NC_005261.1 + 103211 0.7 0.771659
Target:  5'- cGCCAGCGACCgagaCGcCGGCCGCa---- -3'
miRNA:   3'- -UGGUUGCUGGa---GUaGUCGGCGcuacu -5'
23577 5' -54.2 NC_005261.1 + 122934 0.7 0.781157
Target:  5'- uCCGACGACC-CGgaGGCCGCGAc-- -3'
miRNA:   3'- uGGUUGCUGGaGUagUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 114286 0.7 0.790518
Target:  5'- uGCCGACGACCcCGaaacCcGCCGCGAggUGAg -3'
miRNA:   3'- -UGGUUGCUGGaGUa---GuCGGCGCU--ACU- -5'
23577 5' -54.2 NC_005261.1 + 50850 0.7 0.790518
Target:  5'- -aCGACGGCCgaggaCAUCuGCCGCGcgGUGGg -3'
miRNA:   3'- ugGUUGCUGGa----GUAGuCGGCGC--UACU- -5'
23577 5' -54.2 NC_005261.1 + 98851 0.7 0.79973
Target:  5'- cGCCAGggcCGcCCUCccCGGCCGcCGAUGAg -3'
miRNA:   3'- -UGGUU---GCuGGAGuaGUCGGC-GCUACU- -5'
23577 5' -54.2 NC_005261.1 + 64468 0.71 0.722417
Target:  5'- gGCCAGCG-CCUCGUagaagCGGCCGUGGc-- -3'
miRNA:   3'- -UGGUUGCuGGAGUA-----GUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 122373 0.71 0.702088
Target:  5'- aGCCAuugccGCGACCUCGUCcucuagcgcGCuCGCGAUGc -3'
miRNA:   3'- -UGGU-----UGCUGGAGUAGu--------CG-GCGCUACu -5'
23577 5' -54.2 NC_005261.1 + 83355 0.72 0.671158
Target:  5'- cGCCGACG-CCaUCAUcCGGCCGUGcgGGu -3'
miRNA:   3'- -UGGUUGCuGG-AGUA-GUCGGCGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 95058 0.74 0.55696
Target:  5'- cGCCGGCGGCgCcgUAUCGcGCCGCGAUGu -3'
miRNA:   3'- -UGGUUGCUG-Ga-GUAGU-CGGCGCUACu -5'
23577 5' -54.2 NC_005261.1 + 74830 0.74 0.567216
Target:  5'- cGCCGACGACCUCAUguucgacaCGGCCaggGCGAc-- -3'
miRNA:   3'- -UGGUUGCUGGAGUA--------GUCGG---CGCUacu -5'
23577 5' -54.2 NC_005261.1 + 22055 0.73 0.59824
Target:  5'- cCCAGCGGCgUCGgggacgCGGCCGCGAc-- -3'
miRNA:   3'- uGGUUGCUGgAGUa-----GUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 132715 0.73 0.59824
Target:  5'- aGCCGGCGGCCUCGcCGccguGCCGCGGc-- -3'
miRNA:   3'- -UGGUUGCUGGAGUaGU----CGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 84628 0.73 0.608643
Target:  5'- gGCC-ACGGCCUCGUCGGuCCGC--UGGg -3'
miRNA:   3'- -UGGuUGCUGGAGUAGUC-GGCGcuACU- -5'
23577 5' -54.2 NC_005261.1 + 109390 0.73 0.629496
Target:  5'- gGCCAcgACGGCCgCcUCAGCCGCGGc-- -3'
miRNA:   3'- -UGGU--UGCUGGaGuAGUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 135983 0.72 0.66077
Target:  5'- cGCCGGCGGCCUgAgUGGCCGcCGGUGc -3'
miRNA:   3'- -UGGUUGCUGGAgUaGUCGGC-GCUACu -5'
23577 5' -54.2 NC_005261.1 + 47460 0.72 0.671158
Target:  5'- cGCCGcaGCGGCCUCggCGGCCuCGggGAa -3'
miRNA:   3'- -UGGU--UGCUGGAGuaGUCGGcGCuaCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.