miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23577 5' -54.2 NC_005261.1 + 77935 0.66 0.945923
Target:  5'- aGCCGACuGCCUgCG--GGCCGCGggGGc -3'
miRNA:   3'- -UGGUUGcUGGA-GUagUCGGCGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 9360 0.66 0.945475
Target:  5'- cGCCGACGAuCCcCGggAGCCGCauugcgaGGUGAg -3'
miRNA:   3'- -UGGUUGCU-GGaGUagUCGGCG-------CUACU- -5'
23577 5' -54.2 NC_005261.1 + 113877 0.66 0.945475
Target:  5'- cGCCGACGAuCCcCGggAGCCGCauugcgaGGUGAg -3'
miRNA:   3'- -UGGUUGCU-GGaGUagUCGGCG-------CUACU- -5'
23577 5' -54.2 NC_005261.1 + 93976 0.66 0.941327
Target:  5'- cCCcGCGcGCCgcggCGUCGGCCGCGcgcUGGg -3'
miRNA:   3'- uGGuUGC-UGGa---GUAGUCGGCGCu--ACU- -5'
23577 5' -54.2 NC_005261.1 + 6157 0.66 0.941327
Target:  5'- -gCAGCGGCgaCggCGGCCGCGAc-- -3'
miRNA:   3'- ugGUUGCUGgaGuaGUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 30042 0.66 0.941327
Target:  5'- gGCC-GCGGCCUgc-CGGCCGCGGc-- -3'
miRNA:   3'- -UGGuUGCUGGAguaGUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 101517 0.66 0.941327
Target:  5'- cCCGGCGcCCUCGUCgcGGUCGCGc--- -3'
miRNA:   3'- uGGUUGCuGGAGUAG--UCGGCGCuacu -5'
23577 5' -54.2 NC_005261.1 + 116764 0.66 0.941327
Target:  5'- uGCgAACG-CCUUucugguauUCAGCCGCGAg-- -3'
miRNA:   3'- -UGgUUGCuGGAGu-------AGUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 49507 0.66 0.941327
Target:  5'- gGCCggUGACCUCcgaaaaGGUCGCGGg-- -3'
miRNA:   3'- -UGGuuGCUGGAGuag---UCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 122588 0.66 0.941327
Target:  5'- cGCCGcaGCGGCCUUGUacGCCGCGuUGu -3'
miRNA:   3'- -UGGU--UGCUGGAGUAguCGGCGCuACu -5'
23577 5' -54.2 NC_005261.1 + 134560 0.66 0.941327
Target:  5'- gGCC-GCGGCCUgc-CGGCCGCGGc-- -3'
miRNA:   3'- -UGGuUGCUGGAguaGUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 19797 0.66 0.936484
Target:  5'- cGCCGcgGCGGCgUCcgCGGCgGCGAc-- -3'
miRNA:   3'- -UGGU--UGCUGgAGuaGUCGgCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 35282 0.66 0.936484
Target:  5'- cGCCcGCGGCCgccgCcgCAGCgGCGgcGGc -3'
miRNA:   3'- -UGGuUGCUGGa---GuaGUCGgCGCuaCU- -5'
23577 5' -54.2 NC_005261.1 + 9402 0.66 0.936484
Target:  5'- gGCCAGCcGCgCgagCGUCAGCCGCa---- -3'
miRNA:   3'- -UGGUUGcUG-Ga--GUAGUCGGCGcuacu -5'
23577 5' -54.2 NC_005261.1 + 93044 0.66 0.936484
Target:  5'- gGCCGGCauGGCCUCAcacUCGGC-GCGGUa- -3'
miRNA:   3'- -UGGUUG--CUGGAGU---AGUCGgCGCUAcu -5'
23577 5' -54.2 NC_005261.1 + 37129 0.66 0.936484
Target:  5'- cGCCAaggcgcgcGCGGCCgcgcugCAggCGGCCGCGGg-- -3'
miRNA:   3'- -UGGU--------UGCUGGa-----GUa-GUCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 133284 0.66 0.936484
Target:  5'- cGCCGGCGcccGCCUCGU-GGCCGCcaagGAc -3'
miRNA:   3'- -UGGUUGC---UGGAGUAgUCGGCGcua-CU- -5'
23577 5' -54.2 NC_005261.1 + 102051 0.66 0.936484
Target:  5'- cCCGucGCGAUgUgCAUCAGCCGCGucagcUGGc -3'
miRNA:   3'- uGGU--UGCUGgA-GUAGUCGGCGCu----ACU- -5'
23577 5' -54.2 NC_005261.1 + 72771 0.66 0.936484
Target:  5'- aGCaCGGCGGCCgcgcacgCGUCcggGGCCGCGGa-- -3'
miRNA:   3'- -UG-GUUGCUGGa------GUAG---UCGGCGCUacu -5'
23577 5' -54.2 NC_005261.1 + 103945 0.66 0.936484
Target:  5'- cCCGGCGuCCcCGcCGGCCGCcGUGAg -3'
miRNA:   3'- uGGUUGCuGGaGUaGUCGGCGcUACU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.