miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23578 3' -49.1 NC_005261.1 + 136116 0.67 0.99565
Target:  5'- cGCUCggCGCgC---AGGGCGUgCUGCu -3'
miRNA:   3'- -CGAGaaGUGgGuuuUCCUGUAgGACG- -5'
23578 3' -49.1 NC_005261.1 + 72530 0.67 0.99565
Target:  5'- cGCUCUgUCACCCGuccuuucuGGACGUggacCCggUGCu -3'
miRNA:   3'- -CGAGA-AGUGGGUuuu-----CCUGUA----GG--ACG- -5'
23578 3' -49.1 NC_005261.1 + 111152 0.67 0.995921
Target:  5'- aGCUCaUCugCCuauugccgcccccuGAcuGGGGCuUCCUGCu -3'
miRNA:   3'- -CGAGaAGugGGu-------------UU--UCCUGuAGGACG- -5'
23578 3' -49.1 NC_005261.1 + 82943 0.67 0.99624
Target:  5'- gGCUCUUCAgcgccCCCGccuccggcgcgccAGGGGGCGcagaccUCCUcGCg -3'
miRNA:   3'- -CGAGAAGU-----GGGU-------------UUUCCUGU------AGGA-CG- -5'
23578 3' -49.1 NC_005261.1 + 74990 0.67 0.996115
Target:  5'- aGUUCUUCACgCCGGcggaggugucggccAAGGACcg-CUGCa -3'
miRNA:   3'- -CGAGAAGUG-GGUU--------------UUCCUGuagGACG- -5'
23578 3' -49.1 NC_005261.1 + 10466 0.68 0.986403
Target:  5'- aGCUC-UCGCCCGAGcAGGcCGgccCgCUGCa -3'
miRNA:   3'- -CGAGaAGUGGGUUU-UCCuGUa--G-GACG- -5'
23578 3' -49.1 NC_005261.1 + 130700 0.68 0.986403
Target:  5'- uGCUCgagCACCUcgccGAGGACGUCaccuucgcgCUGCc -3'
miRNA:   3'- -CGAGaa-GUGGGuu--UUCCUGUAG---------GACG- -5'
23578 3' -49.1 NC_005261.1 + 56881 0.68 0.992047
Target:  5'- cGCUCg-CACCUucAAGGGCAUCaagaucgGCu -3'
miRNA:   3'- -CGAGaaGUGGGuuUUCCUGUAGga-----CG- -5'
23578 3' -49.1 NC_005261.1 + 19926 0.68 0.992047
Target:  5'- cGCUC-UCGCCCucgcuaGCGUCCUGg -3'
miRNA:   3'- -CGAGaAGUGGGuuuuccUGUAGGACg -5'
23578 3' -49.1 NC_005261.1 + 51343 0.68 0.989519
Target:  5'- gGCUCUUCugCaccgcuGGGCuGUCCgGCg -3'
miRNA:   3'- -CGAGAAGugGguuuu-CCUG-UAGGaCG- -5'
23578 3' -49.1 NC_005261.1 + 11720 0.68 0.986403
Target:  5'- cGCggg-CGCCCAGGcaGACcgCCUGCg -3'
miRNA:   3'- -CGagaaGUGGGUUUucCUGuaGGACG- -5'
23578 3' -49.1 NC_005261.1 + 114983 0.68 0.986403
Target:  5'- aGCUC-UCGCCCGAGcAGGcCGgccCgCUGCa -3'
miRNA:   3'- -CGAGaAGUGGGUUU-UCCuGUa--G-GACG- -5'
23578 3' -49.1 NC_005261.1 + 96554 0.68 0.992047
Target:  5'- aCUCUUCACaCCGcGAGGugAgcgCCUa- -3'
miRNA:   3'- cGAGAAGUG-GGUuUUCCugUa--GGAcg -5'
23578 3' -49.1 NC_005261.1 + 33329 0.68 0.990852
Target:  5'- ------gGCCCuGGAGGGCGUCCggGCg -3'
miRNA:   3'- cgagaagUGGGuUUUCCUGUAGGa-CG- -5'
23578 3' -49.1 NC_005261.1 + 61441 0.68 0.988039
Target:  5'- cGCUCgcgcggCGCCagcgcGGGGGCGUCC-GCg -3'
miRNA:   3'- -CGAGaa----GUGGguu--UUCCUGUAGGaCG- -5'
23578 3' -49.1 NC_005261.1 + 52927 0.69 0.978096
Target:  5'- aGCUCUUC-CCCAAcGGGAag-CC-GCc -3'
miRNA:   3'- -CGAGAAGuGGGUUuUCCUguaGGaCG- -5'
23578 3' -49.1 NC_005261.1 + 38795 0.69 0.985342
Target:  5'- cGCUCUUcCGCCCGAcGGGGAgCAgcgugacguucacgcUCgUGCg -3'
miRNA:   3'- -CGAGAA-GUGGGUU-UUCCU-GU---------------AGgACG- -5'
23578 3' -49.1 NC_005261.1 + 135351 0.69 0.980456
Target:  5'- aGCggUUCGCCCccGAGGGCcgCC-GCg -3'
miRNA:   3'- -CGagAAGUGGGuuUUCCUGuaGGaCG- -5'
23578 3' -49.1 NC_005261.1 + 129788 0.69 0.980456
Target:  5'- uUUUUUCGCCgCGAGGGGGCGcggUCUGUg -3'
miRNA:   3'- cGAGAAGUGG-GUUUUCCUGUa--GGACG- -5'
23578 3' -49.1 NC_005261.1 + 90024 0.69 0.980456
Target:  5'- cGC-CUg-GCCCGGGagcGGGGCuUCCUGCu -3'
miRNA:   3'- -CGaGAagUGGGUUU---UCCUGuAGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.