miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23578 3' -49.1 NC_005261.1 + 68080 0.66 0.997365
Target:  5'- uGCUgUUC-CCCAAcGGGACGgucgugagCgUGCu -3'
miRNA:   3'- -CGAgAAGuGGGUUuUCCUGUa-------GgACG- -5'
23578 3' -49.1 NC_005261.1 + 68371 0.66 0.99687
Target:  5'- cGCUCggcgUCGCCUc--GGGGC-UCgUGCu -3'
miRNA:   3'- -CGAGa---AGUGGGuuuUCCUGuAGgACG- -5'
23578 3' -49.1 NC_005261.1 + 72024 0.66 0.99687
Target:  5'- gGCgacgCUgcgCGCCCcc-GGGAaguaccaGUCCUGCa -3'
miRNA:   3'- -CGa---GAa--GUGGGuuuUCCUg------UAGGACG- -5'
23578 3' -49.1 NC_005261.1 + 72530 0.67 0.99565
Target:  5'- cGCUCUgUCACCCGuccuuucuGGACGUggacCCggUGCu -3'
miRNA:   3'- -CGAGA-AGUGGGUuuu-----CCUGUA----GG--ACG- -5'
23578 3' -49.1 NC_005261.1 + 74052 0.72 0.908122
Target:  5'- cGCUUUUCGCCUgcccGGACcaCCUGCa -3'
miRNA:   3'- -CGAGAAGUGGGuuuuCCUGuaGGACG- -5'
23578 3' -49.1 NC_005261.1 + 74355 0.67 0.993509
Target:  5'- uGCUCUUCGCCgAGAAGGcCucggagucguacuuuGUCggGCa -3'
miRNA:   3'- -CGAGAAGUGGgUUUUCCuG---------------UAGgaCG- -5'
23578 3' -49.1 NC_005261.1 + 74990 0.67 0.996115
Target:  5'- aGUUCUUCACgCCGGcggaggugucggccAAGGACcg-CUGCa -3'
miRNA:   3'- -CGAGAAGUG-GGUU--------------UUCCUGuagGACG- -5'
23578 3' -49.1 NC_005261.1 + 75682 0.66 0.99687
Target:  5'- cCUCUUC-CUCGccGAGGACcagagCCUGCu -3'
miRNA:   3'- cGAGAAGuGGGUu-UUCCUGua---GGACG- -5'
23578 3' -49.1 NC_005261.1 + 75977 0.66 0.997793
Target:  5'- aGCUCUUCccgggcgcggccGCCCucgcgcuGGACGcCCUGg -3'
miRNA:   3'- -CGAGAAG------------UGGGuuuu---CCUGUaGGACg -5'
23578 3' -49.1 NC_005261.1 + 76896 0.73 0.904206
Target:  5'- cGCUCUUCGCCCAcgucgcgcugugcguGcuGGGCcgCC-GCg -3'
miRNA:   3'- -CGAGAAGUGGGU---------------UuuCCUGuaGGaCG- -5'
23578 3' -49.1 NC_005261.1 + 78333 0.71 0.942029
Target:  5'- uGCUCUUCGCCUAc---GACGagCUGCu -3'
miRNA:   3'- -CGAGAAGUGGGUuuucCUGUagGACG- -5'
23578 3' -49.1 NC_005261.1 + 80781 0.67 0.99565
Target:  5'- uGCUCUUCGCggacgCCGucgcgcGGGugcGCAUCCUGg -3'
miRNA:   3'- -CGAGAAGUG-----GGUuu----UCC---UGUAGGACg -5'
23578 3' -49.1 NC_005261.1 + 82517 0.74 0.831231
Target:  5'- cCUCUUCGCCCGAGucGGcccCAUCCUcGCc -3'
miRNA:   3'- cGAGAAGUGGGUUUu-CCu--GUAGGA-CG- -5'
23578 3' -49.1 NC_005261.1 + 82894 0.7 0.972755
Target:  5'- cCUCgccgCGCgCCGAcGAGGACAUCCagaacUGCa -3'
miRNA:   3'- cGAGaa--GUG-GGUU-UUCCUGUAGG-----ACG- -5'
23578 3' -49.1 NC_005261.1 + 82943 0.67 0.99624
Target:  5'- gGCUCUUCAgcgccCCCGccuccggcgcgccAGGGGGCGcagaccUCCUcGCg -3'
miRNA:   3'- -CGAGAAGU-----GGGU-------------UUUCCUGU------AGGA-CG- -5'
23578 3' -49.1 NC_005261.1 + 83044 0.66 0.99687
Target:  5'- cGCUCgcCGCggGAGGGGGCucCCUGCg -3'
miRNA:   3'- -CGAGaaGUGggUUUUCCUGuaGGACG- -5'
23578 3' -49.1 NC_005261.1 + 83724 0.66 0.99687
Target:  5'- cGC-CgUCGCC--GGAGGGCG-CCUGCg -3'
miRNA:   3'- -CGaGaAGUGGguUUUCCUGUaGGACG- -5'
23578 3' -49.1 NC_005261.1 + 85985 0.71 0.946751
Target:  5'- cGCUCgagcugCGCcgCCGAcGGGGCGUCgUGCg -3'
miRNA:   3'- -CGAGaa----GUG--GGUUuUCCUGUAGgACG- -5'
23578 3' -49.1 NC_005261.1 + 89467 0.71 0.951212
Target:  5'- aGCUCgucgggcCGCCCGGGGGGcgcgacuacgcGCAgugCCUGCu -3'
miRNA:   3'- -CGAGaa-----GUGGGUUUUCC-----------UGUa--GGACG- -5'
23578 3' -49.1 NC_005261.1 + 90024 0.69 0.980456
Target:  5'- cGC-CUg-GCCCGGGagcGGGGCuUCCUGCu -3'
miRNA:   3'- -CGaGAagUGGGUUU---UCCUGuAGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.