miRNA display CGI


Results 21 - 40 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23578 3' -49.1 NC_005261.1 + 103459 0.66 0.99687
Target:  5'- gGCcgCcgCGCCCGucgccAGGGCGUCCaGCu -3'
miRNA:   3'- -CGa-GaaGUGGGUuu---UCCUGUAGGaCG- -5'
23578 3' -49.1 NC_005261.1 + 68371 0.66 0.99687
Target:  5'- cGCUCggcgUCGCCUc--GGGGC-UCgUGCu -3'
miRNA:   3'- -CGAGa---AGUGGGuuuUCCUGuAGgACG- -5'
23578 3' -49.1 NC_005261.1 + 75682 0.66 0.99687
Target:  5'- cCUCUUC-CUCGccGAGGACcagagCCUGCu -3'
miRNA:   3'- cGAGAAGuGGGUu-UUCCUGua---GGACG- -5'
23578 3' -49.1 NC_005261.1 + 100584 0.66 0.99687
Target:  5'- cCUCgUCGCCCAGGAGcGCcgCCacGCg -3'
miRNA:   3'- cGAGaAGUGGGUUUUCcUGuaGGa-CG- -5'
23578 3' -49.1 NC_005261.1 + 103993 0.67 0.996301
Target:  5'- -gUCUUCGCCCcAGAuGACGgccgcgUCUGCg -3'
miRNA:   3'- cgAGAAGUGGGuUUUcCUGUa-----GGACG- -5'
23578 3' -49.1 NC_005261.1 + 37426 0.67 0.996301
Target:  5'- gGCgcacgCGCCCuuccGGGACcugcugGUCCUGCg -3'
miRNA:   3'- -CGagaa-GUGGGuuu-UCCUG------UAGGACG- -5'
23578 3' -49.1 NC_005261.1 + 37553 0.67 0.996301
Target:  5'- cGCUCccgccgcCGCCaccGGGGuGCGUCCUGCc -3'
miRNA:   3'- -CGAGaa-----GUGGguuUUCC-UGUAGGACG- -5'
23578 3' -49.1 NC_005261.1 + 82943 0.67 0.99624
Target:  5'- gGCUCUUCAgcgccCCCGccuccggcgcgccAGGGGGCGcagaccUCCUcGCg -3'
miRNA:   3'- -CGAGAAGU-----GGGU-------------UUUCCUGU------AGGA-CG- -5'
23578 3' -49.1 NC_005261.1 + 74990 0.67 0.996115
Target:  5'- aGUUCUUCACgCCGGcggaggugucggccAAGGACcg-CUGCa -3'
miRNA:   3'- -CGAGAAGUG-GGUU--------------UUCCUGuagGACG- -5'
23578 3' -49.1 NC_005261.1 + 14125 0.67 0.996051
Target:  5'- gGCUCgggcggugggcagUCGCUCGcGAGGACGcUCCaGCc -3'
miRNA:   3'- -CGAGa------------AGUGGGUuUUCCUGU-AGGaCG- -5'
23578 3' -49.1 NC_005261.1 + 111152 0.67 0.995921
Target:  5'- aGCUCaUCugCCuauugccgcccccuGAcuGGGGCuUCCUGCu -3'
miRNA:   3'- -CGAGaAGugGGu-------------UU--UCCUGuAGGACG- -5'
23578 3' -49.1 NC_005261.1 + 6635 0.67 0.995921
Target:  5'- aGCUCaUCugCCuauugccgcccccuGAcuGGGGCuUCCUGCu -3'
miRNA:   3'- -CGAGaAGugGGu-------------UU--UCCUGuAGGACG- -5'
23578 3' -49.1 NC_005261.1 + 31599 0.67 0.99565
Target:  5'- cGCUCggCGCgC---AGGGCGUgCUGCu -3'
miRNA:   3'- -CGAGaaGUGgGuuuUCCUGUAgGACG- -5'
23578 3' -49.1 NC_005261.1 + 136116 0.67 0.99565
Target:  5'- cGCUCggCGCgC---AGGGCGUgCUGCu -3'
miRNA:   3'- -CGAGaaGUGgGuuuUCCUGUAgGACG- -5'
23578 3' -49.1 NC_005261.1 + 72530 0.67 0.99565
Target:  5'- cGCUCUgUCACCCGuccuuucuGGACGUggacCCggUGCu -3'
miRNA:   3'- -CGAGA-AGUGGGUuuu-----CCUGUA----GG--ACG- -5'
23578 3' -49.1 NC_005261.1 + 80781 0.67 0.99565
Target:  5'- uGCUCUUCGCggacgCCGucgcgcGGGugcGCAUCCUGg -3'
miRNA:   3'- -CGAGAAGUG-----GGUuu----UCC---UGUAGGACg -5'
23578 3' -49.1 NC_005261.1 + 53805 0.67 0.99558
Target:  5'- gGCUggUCGCCgGAGGGcgcggccGACAUgCUGCg -3'
miRNA:   3'- -CGAgaAGUGGgUUUUC-------CUGUAgGACG- -5'
23578 3' -49.1 NC_005261.1 + 24006 0.67 0.995216
Target:  5'- cGCUgUaCACCCGcgagugcaccaccucGAuGGAC-UCCUGCu -3'
miRNA:   3'- -CGAgAaGUGGGU---------------UUuCCUGuAGGACG- -5'
23578 3' -49.1 NC_005261.1 + 5436 0.67 0.994907
Target:  5'- gGCUCaUgGCCUcggcGAAGGGGCGcUCCaGCa -3'
miRNA:   3'- -CGAGaAgUGGG----UUUUCCUGU-AGGaCG- -5'
23578 3' -49.1 NC_005261.1 + 65345 0.67 0.994907
Target:  5'- aGCUCUaC-CCCGGcggcGGGGCGgaCCUGCc -3'
miRNA:   3'- -CGAGAaGuGGGUUu---UCCUGUa-GGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.