Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23579 | 3' | -56.1 | NC_005261.1 | + | 58776 | 0.67 | 0.860807 |
Target: 5'- aGGACCGCgaguuccugccGCUGGAGguguacacgcgcGCCGAGcUCg -3' miRNA: 3'- gCUUGGCGac---------CGACCUC------------UGGCUCaAG- -5' |
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23579 | 3' | -56.1 | NC_005261.1 | + | 19861 | 0.67 | 0.85772 |
Target: 5'- uCGGGCCGCgcgccccagcgcccGGCcGaGAGGCCGAGg-- -3' miRNA: 3'- -GCUUGGCGa-------------CCGaC-CUCUGGCUCaag -5' |
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23579 | 3' | -56.1 | NC_005261.1 | + | 97085 | 0.67 | 0.854601 |
Target: 5'- gGAGgCGCcGGCUGG--GCCGGGggCg -3' miRNA: 3'- gCUUgGCGaCCGACCucUGGCUCaaG- -5' |
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23579 | 3' | -56.1 | NC_005261.1 | + | 89190 | 0.67 | 0.854601 |
Target: 5'- gGAGCCGCUcgcgGGCgccGAGGCCGAc--- -3' miRNA: 3'- gCUUGGCGA----CCGac-CUCUGGCUcaag -5' |
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23579 | 3' | -56.1 | NC_005261.1 | + | 118656 | 0.67 | 0.854601 |
Target: 5'- cCGGGCCGC-GcGCUcGGGGCUGAGggCg -3' miRNA: 3'- -GCUUGGCGaC-CGAcCUCUGGCUCaaG- -5' |
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23579 | 3' | -56.1 | NC_005261.1 | + | 128104 | 0.67 | 0.84666 |
Target: 5'- gCGAGCgGCgcGGCgcgGGgucGGGCCGAGUg- -3' miRNA: 3'- -GCUUGgCGa-CCGa--CC---UCUGGCUCAag -5' |
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23579 | 3' | -56.1 | NC_005261.1 | + | 47234 | 0.67 | 0.84666 |
Target: 5'- --uGCCGCcGGCgacGAGGCCGAGg-- -3' miRNA: 3'- gcuUGGCGaCCGac-CUCUGGCUCaag -5' |
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23579 | 3' | -56.1 | NC_005261.1 | + | 213 | 0.67 | 0.838524 |
Target: 5'- cCGGGCCGCgccgGGCUGcGGGCCGc---- -3' miRNA: 3'- -GCUUGGCGa---CCGACcUCUGGCucaag -5' |
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23579 | 3' | -56.1 | NC_005261.1 | + | 33367 | 0.67 | 0.838524 |
Target: 5'- cCGGGCCGCgccgGGCUGcGGGCCGc---- -3' miRNA: 3'- -GCUUGGCGa---CCGACcUCUGGCucaag -5' |
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23579 | 3' | -56.1 | NC_005261.1 | + | 137884 | 0.67 | 0.838524 |
Target: 5'- cCGGGCCGCgccgGGCUGcGGGCCGc---- -3' miRNA: 3'- -GCUUGGCGa---CCGACcUCUGGCucaag -5' |
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23579 | 3' | -56.1 | NC_005261.1 | + | 51801 | 0.67 | 0.830197 |
Target: 5'- uGGACCacCUGGCgaUGGcGugCGGGUUCu -3' miRNA: 3'- gCUUGGc-GACCG--ACCuCugGCUCAAG- -5' |
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23579 | 3' | -56.1 | NC_005261.1 | + | 4452 | 0.67 | 0.821689 |
Target: 5'- gGAugcGCCGCacgagGGCgUGGAGGCaCGGGgcgUCg -3' miRNA: 3'- gCU---UGGCGa----CCG-ACCUCUG-GCUCa--AG- -5' |
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23579 | 3' | -56.1 | NC_005261.1 | + | 41334 | 0.67 | 0.821689 |
Target: 5'- aGAuCUGCUGGC-GGAcGCCGAGg-- -3' miRNA: 3'- gCUuGGCGACCGaCCUcUGGCUCaag -5' |
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23579 | 3' | -56.1 | NC_005261.1 | + | 113639 | 0.68 | 0.804158 |
Target: 5'- aGGGCCGCcgGGaCUGGGGG-CGGGUg- -3' miRNA: 3'- gCUUGGCGa-CC-GACCUCUgGCUCAag -5' |
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23579 | 3' | -56.1 | NC_005261.1 | + | 77238 | 0.68 | 0.804158 |
Target: 5'- gGAGCCGgaGGCgcgGGcguugcucgugaAGGCCGGGUc- -3' miRNA: 3'- gCUUGGCgaCCGa--CC------------UCUGGCUCAag -5' |
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23579 | 3' | -56.1 | NC_005261.1 | + | 9121 | 0.68 | 0.804158 |
Target: 5'- aGGGCCGCcgGGaCUGGGGG-CGGGUg- -3' miRNA: 3'- gCUUGGCGa-CC-GACCUCUgGCUCAag -5' |
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23579 | 3' | -56.1 | NC_005261.1 | + | 83845 | 0.68 | 0.804158 |
Target: 5'- gCGGGCCGCggccccgcugGGCUGGgccGGGCCGGa--- -3' miRNA: 3'- -GCUUGGCGa---------CCGACC---UCUGGCUcaag -5' |
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23579 | 3' | -56.1 | NC_005261.1 | + | 34087 | 0.68 | 0.801472 |
Target: 5'- --cGCCGCUGGCUGGAGGggcgcccaaccugcCCGcuGUg- -3' miRNA: 3'- gcuUGGCGACCGACCUCU--------------GGCu-CAag -5' |
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23579 | 3' | -56.1 | NC_005261.1 | + | 138039 | 0.68 | 0.795152 |
Target: 5'- gCGGcACCGCUGGCcccgGGAGcACCaGGggCg -3' miRNA: 3'- -GCU-UGGCGACCGa---CCUC-UGGcUCaaG- -5' |
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23579 | 3' | -56.1 | NC_005261.1 | + | 356 | 0.68 | 0.795152 |
Target: 5'- gCGGcACCGCUGGCcccgGGAGcACCaGGggCg -3' miRNA: 3'- -GCU-UGGCGACCGa---CCUC-UGGcUCaaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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