miRNA display CGI


Results 41 - 60 of 544 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 21875 0.66 0.717229
Target:  5'- cGCGGCGgCAcGGACGaacccgcacggGGCGauggGGCUCu -3'
miRNA:   3'- -UGCUGCgGUuCCUGCa----------CCGCg---CCGAG- -5'
23579 5' -60.4 NC_005261.1 + 49841 0.66 0.70747
Target:  5'- uCGcCGUCGAGGuACaccuugGGCGCGcGCUCg -3'
miRNA:   3'- uGCuGCGGUUCC-UGca----CCGCGC-CGAG- -5'
23579 5' -60.4 NC_005261.1 + 85784 0.66 0.686788
Target:  5'- gACGcGCGCCGGGGAccuCGUGGCccuggacGCGGaCg- -3'
miRNA:   3'- -UGC-UGCGGUUCCU---GCACCG-------CGCC-Gag -5'
23579 5' -60.4 NC_005261.1 + 124166 0.66 0.667908
Target:  5'- gACGugGCCcuGGACGcGGCcugccuGCGgaccGCUCg -3'
miRNA:   3'- -UGCugCGGuuCCUGCaCCG------CGC----CGAG- -5'
23579 5' -60.4 NC_005261.1 + 134321 0.66 0.687778
Target:  5'- cCGGCGCCGGcGGCGcgGGCGCccgcgccgcGCUCg -3'
miRNA:   3'- uGCUGCGGUUcCUGCa-CCGCGc--------CGAG- -5'
23579 5' -60.4 NC_005261.1 + 108369 0.66 0.69765
Target:  5'- aGCGGCGCC---GGCGccGCGCGGC-Cg -3'
miRNA:   3'- -UGCUGCGGuucCUGCacCGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 92284 0.66 0.687778
Target:  5'- aACGGCGCCcuGG-CGgcccucGcGCGCGGCg- -3'
miRNA:   3'- -UGCUGCGGuuCCuGCa-----C-CGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 91600 0.66 0.667908
Target:  5'- cACGuACGUCAAGGACGgcuucuggGGCGCcuucgGGgaCg -3'
miRNA:   3'- -UGC-UGCGGUUCCUGCa-------CCGCG-----CCgaG- -5'
23579 5' -60.4 NC_005261.1 + 41870 0.66 0.70747
Target:  5'- cGCGgccGCGCCAggccagucAGGGCGUcaGGUGCGcGCg- -3'
miRNA:   3'- -UGC---UGCGGU--------UCCUGCA--CCGCGC-CGag -5'
23579 5' -60.4 NC_005261.1 + 82609 0.66 0.677861
Target:  5'- gACGACGCgGAGGAC---GCGCuGCUg -3'
miRNA:   3'- -UGCUGCGgUUCCUGcacCGCGcCGAg -5'
23579 5' -60.4 NC_005261.1 + 90845 0.66 0.70747
Target:  5'- gGCGGCGCCGccccGACGguUGuGCGCGcGCUg -3'
miRNA:   3'- -UGCUGCGGUuc--CUGC--AC-CGCGC-CGAg -5'
23579 5' -60.4 NC_005261.1 + 69569 0.66 0.717229
Target:  5'- -gGACGCCGGcGGCGcgGGCGgCGGUg- -3'
miRNA:   3'- ugCUGCGGUUcCUGCa-CCGC-GCCGag -5'
23579 5' -60.4 NC_005261.1 + 12915 0.66 0.69765
Target:  5'- -gGACGCCGAGGcCGcGGagcgccCGCGGgUCc -3'
miRNA:   3'- ugCUGCGGUUCCuGCaCC------GCGCCgAG- -5'
23579 5' -60.4 NC_005261.1 + 23019 0.66 0.717229
Target:  5'- cACGaucGCGCCGcGGACGcacgGGCGCugGGC-Cg -3'
miRNA:   3'- -UGC---UGCGGUuCCUGCa---CCGCG--CCGaG- -5'
23579 5' -60.4 NC_005261.1 + 84876 0.66 0.687778
Target:  5'- gGCGGCgGCCGaaagcgcggcgGGGGCG-GGCGCagaGGCg- -3'
miRNA:   3'- -UGCUG-CGGU-----------UCCUGCaCCGCG---CCGag -5'
23579 5' -60.4 NC_005261.1 + 73930 0.66 0.706491
Target:  5'- cGCGACGCgAAacaugcgcacgcuGGACGcGGCGCuGCa- -3'
miRNA:   3'- -UGCUGCGgUU-------------CCUGCaCCGCGcCGag -5'
23579 5' -60.4 NC_005261.1 + 115586 0.66 0.667908
Target:  5'- gGCGcCGCCAgcgcgucuaGGGACGggacGGgGCGGgaCg -3'
miRNA:   3'- -UGCuGCGGU---------UCCUGCa---CCgCGCCgaG- -5'
23579 5' -60.4 NC_005261.1 + 2522 0.66 0.70747
Target:  5'- uACGAgGCUggGcAgGUGGCGaGGCUUa -3'
miRNA:   3'- -UGCUgCGGuuCcUgCACCGCgCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 26577 0.66 0.70747
Target:  5'- cGCGGCGCgGgAGGGCuGggaGGCGgCGGCg- -3'
miRNA:   3'- -UGCUGCGgU-UCCUG-Ca--CCGC-GCCGag -5'
23579 5' -60.4 NC_005261.1 + 30008 0.66 0.687778
Target:  5'- cACGuGCGCCAugcuGGAgCGcgccgugcUGGCGCaGCUCu -3'
miRNA:   3'- -UGC-UGCGGUu---CCU-GC--------ACCGCGcCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.