miRNA display CGI


Results 61 - 80 of 544 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 15214 0.66 0.69765
Target:  5'- cCGACGCuCGcGGACGccacGGCcGCGGC-Cg -3'
miRNA:   3'- uGCUGCG-GUuCCUGCa---CCG-CGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 23232 0.66 0.667908
Target:  5'- cGCGGgGCCGGGGcCGcGGCGgcCGGCcCg -3'
miRNA:   3'- -UGCUgCGGUUCCuGCaCCGC--GCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 54351 0.66 0.717229
Target:  5'- uCGAUgGCCAgucccAGGuccGCG-GGCaGCGGCUCg -3'
miRNA:   3'- uGCUG-CGGU-----UCC---UGCaCCG-CGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 67670 0.66 0.717229
Target:  5'- cGCGGCGCCAGGcGCGgUGaGCGCGuCa- -3'
miRNA:   3'- -UGCUGCGGUUCcUGC-AC-CGCGCcGag -5'
23579 5' -60.4 NC_005261.1 + 41870 0.66 0.70747
Target:  5'- cGCGgccGCGCCAggccagucAGGGCGUcaGGUGCGcGCg- -3'
miRNA:   3'- -UGC---UGCGGU--------UCCUGCA--CCGCGC-CGag -5'
23579 5' -60.4 NC_005261.1 + 109875 0.66 0.717229
Target:  5'- aGCGGgGCCcgcGGGCG-GGCGCcccggGGCUa -3'
miRNA:   3'- -UGCUgCGGuu-CCUGCaCCGCG-----CCGAg -5'
23579 5' -60.4 NC_005261.1 + 37507 0.66 0.717229
Target:  5'- cGCG-CGCgCGcGcGGCGcGGcCGCGGCUCg -3'
miRNA:   3'- -UGCuGCG-GUuC-CUGCaCC-GCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 105916 0.66 0.69765
Target:  5'- -gGGCGCCGcGGcCGcGGCGgCGGCg- -3'
miRNA:   3'- ugCUGCGGUuCCuGCaCCGC-GCCGag -5'
23579 5' -60.4 NC_005261.1 + 31533 0.66 0.70747
Target:  5'- uGCaGCGCU-GGGACGcgaucGGCGCGGCccUCg -3'
miRNA:   3'- -UGcUGCGGuUCCUGCa----CCGCGCCG--AG- -5'
23579 5' -60.4 NC_005261.1 + 85906 0.66 0.70747
Target:  5'- -gGGCGCCAAGGACGgcgagGaGUGCGaCg- -3'
miRNA:   3'- ugCUGCGGUUCCUGCa----C-CGCGCcGag -5'
23579 5' -60.4 NC_005261.1 + 70513 0.66 0.70747
Target:  5'- uCGGCGCCAcgGGGACGaucGCcacgGCGGCg- -3'
miRNA:   3'- uGCUGCGGU--UCCUGCac-CG----CGCCGag -5'
23579 5' -60.4 NC_005261.1 + 48301 0.66 0.69765
Target:  5'- aGCGAgGCCucggGGGGCGcgucgGGCcCgGGCUCg -3'
miRNA:   3'- -UGCUgCGGu---UCCUGCa----CCGcG-CCGAG- -5'
23579 5' -60.4 NC_005261.1 + 7428 0.66 0.716256
Target:  5'- uCGACGUauuGGGCGUcguccgcGGUGCGGC-Ca -3'
miRNA:   3'- uGCUGCGguuCCUGCA-------CCGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 131585 0.66 0.69765
Target:  5'- cGCGACgGCCGAGGccuACGcGcGCGCGcGCa- -3'
miRNA:   3'- -UGCUG-CGGUUCC---UGCaC-CGCGC-CGag -5'
23579 5' -60.4 NC_005261.1 + 90845 0.66 0.70747
Target:  5'- gGCGGCGCCGccccGACGguUGuGCGCGcGCUg -3'
miRNA:   3'- -UGCUGCGGUuc--CUGC--AC-CGCGC-CGAg -5'
23579 5' -60.4 NC_005261.1 + 133716 0.66 0.70747
Target:  5'- cCGGCGCCGucuACGUcGGgGCGGCg- -3'
miRNA:   3'- uGCUGCGGUuccUGCA-CCgCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 3852 0.66 0.69765
Target:  5'- aGCGGCGCC---GGCGccGCGCGGC-Cg -3'
miRNA:   3'- -UGCUGCGGuucCUGCacCGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 73930 0.66 0.706491
Target:  5'- cGCGACGCgAAacaugcgcacgcuGGACGcGGCGCuGCa- -3'
miRNA:   3'- -UGCUGCGgUU-------------CCUGCaCCGCGcCGag -5'
23579 5' -60.4 NC_005261.1 + 108744 0.66 0.70747
Target:  5'- gGCGGCGCCGcGG-CGUccgcGGCGCGccGCg- -3'
miRNA:   3'- -UGCUGCGGUuCCuGCA----CCGCGC--CGag -5'
23579 5' -60.4 NC_005261.1 + 26577 0.66 0.70747
Target:  5'- cGCGGCGCgGgAGGGCuGggaGGCGgCGGCg- -3'
miRNA:   3'- -UGCUGCGgU-UCCUG-Ca--CCGC-GCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.