miRNA display CGI


Results 81 - 100 of 544 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 12915 0.66 0.69765
Target:  5'- -gGACGCCGAGGcCGcGGagcgccCGCGGgUCc -3'
miRNA:   3'- ugCUGCGGUUCCuGCaCC------GCGCCgAG- -5'
23579 5' -60.4 NC_005261.1 + 19367 0.66 0.677861
Target:  5'- cCGAgGCCAGGGcCGcgGGCGCGccgccCUCc -3'
miRNA:   3'- uGCUgCGGUUCCuGCa-CCGCGCc----GAG- -5'
23579 5' -60.4 NC_005261.1 + 75218 0.66 0.667908
Target:  5'- cCGGCGCCcgc-GCG-GGCGCGGC-Cg -3'
miRNA:   3'- uGCUGCGGuuccUGCaCCGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 115586 0.66 0.667908
Target:  5'- gGCGcCGCCAgcgcgucuaGGGACGggacGGgGCGGgaCg -3'
miRNA:   3'- -UGCuGCGGU---------UCCUGCa---CCgCGCCgaG- -5'
23579 5' -60.4 NC_005261.1 + 80823 0.66 0.69765
Target:  5'- cGCGGCGCCGGccGCGaucacgGGCGC-GCUCc -3'
miRNA:   3'- -UGCUGCGGUUccUGCa-----CCGCGcCGAG- -5'
23579 5' -60.4 NC_005261.1 + 52237 0.66 0.69765
Target:  5'- cACGACGCCcc-GuCGgcGGCGCaGCUCg -3'
miRNA:   3'- -UGCUGCGGuucCuGCa-CCGCGcCGAG- -5'
23579 5' -60.4 NC_005261.1 + 108369 0.66 0.69765
Target:  5'- aGCGGCGCC---GGCGccGCGCGGC-Cg -3'
miRNA:   3'- -UGCUGCGGuucCUGCacCGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 4343 0.66 0.691732
Target:  5'- aGCG-CGCCGcGGGCuugcgcagaccacagGUaGGCGCGGCa- -3'
miRNA:   3'- -UGCuGCGGUuCCUG---------------CA-CCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 16422 0.66 0.70747
Target:  5'- -aGAgGCCcccucGACGgcgGGCgGCGGCUCg -3'
miRNA:   3'- ugCUgCGGuuc--CUGCa--CCG-CGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 96354 0.66 0.677861
Target:  5'- cUGACGCCcugacuGGCcUGGCGCGGC-Cg -3'
miRNA:   3'- uGCUGCGGuuc---CUGcACCGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 124166 0.66 0.667908
Target:  5'- gACGugGCCcuGGACGcGGCcugccuGCGgaccGCUCg -3'
miRNA:   3'- -UGCugCGGuuCCUGCaCCG------CGC----CGAG- -5'
23579 5' -60.4 NC_005261.1 + 91600 0.66 0.667908
Target:  5'- cACGuACGUCAAGGACGgcuucuggGGCGCcuucgGGgaCg -3'
miRNA:   3'- -UGC-UGCGGUUCCUGCa-------CCGCG-----CCgaG- -5'
23579 5' -60.4 NC_005261.1 + 96318 0.66 0.677861
Target:  5'- cUGACGCCcugacuGGCcUGGCGCGGC-Cg -3'
miRNA:   3'- uGCUGCGGuuc---CUGcACCGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 119220 0.66 0.677861
Target:  5'- cAUGGCccuGCCGGGGcgaGCGUGGCcgaucGCGGC-Ca -3'
miRNA:   3'- -UGCUG---CGGUUCC---UGCACCG-----CGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 6618 0.66 0.717229
Target:  5'- -gGGCGCCAGGcGcgcguACGUGcGCGCGcGCg- -3'
miRNA:   3'- ugCUGCGGUUC-C-----UGCAC-CGCGC-CGag -5'
23579 5' -60.4 NC_005261.1 + 75946 0.66 0.70747
Target:  5'- cGCGGCGCCGAcGuGAUGUaccacaacgGGCGCcGCUa -3'
miRNA:   3'- -UGCUGCGGUU-C-CUGCA---------CCGCGcCGAg -5'
23579 5' -60.4 NC_005261.1 + 86293 0.66 0.717229
Target:  5'- gUGGCGCCGgcgacgagcGGGACcaGGCcGCGGC-Cg -3'
miRNA:   3'- uGCUGCGGU---------UCCUGcaCCG-CGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 108744 0.66 0.70747
Target:  5'- gGCGGCGCCGcGG-CGUccgcGGCGCGccGCg- -3'
miRNA:   3'- -UGCUGCGGUuCCuGCA----CCGCGC--CGag -5'
23579 5' -60.4 NC_005261.1 + 77662 0.66 0.70747
Target:  5'- cCGGCGCCugcAGG-CGcagGGCGCGGaCg- -3'
miRNA:   3'- uGCUGCGGu--UCCuGCa--CCGCGCC-Gag -5'
23579 5' -60.4 NC_005261.1 + 23019 0.66 0.717229
Target:  5'- cACGaucGCGCCGcGGACGcacgGGCGCugGGC-Cg -3'
miRNA:   3'- -UGC---UGCGGUuCCUGCa---CCGCG--CCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.