miRNA display CGI


Results 101 - 120 of 544 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 53583 0.66 0.70747
Target:  5'- gGCGGCGCCAgccGGGACaacacgcugGUGGagGC-GCUCc -3'
miRNA:   3'- -UGCUGCGGU---UCCUG---------CACCg-CGcCGAG- -5'
23579 5' -60.4 NC_005261.1 + 2522 0.66 0.70747
Target:  5'- uACGAgGCUggGcAgGUGGCGaGGCUUa -3'
miRNA:   3'- -UGCUgCGGuuCcUgCACCGCgCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 79970 0.66 0.70747
Target:  5'- aGCG-CGgCGAGcgcGGCGcGGCGCGGCa- -3'
miRNA:   3'- -UGCuGCgGUUC---CUGCaCCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 78201 0.66 0.70747
Target:  5'- uCGGCGCCGAcGGC--GGCG-GGCUCu -3'
miRNA:   3'- uGCUGCGGUUcCUGcaCCGCgCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 85906 0.66 0.70747
Target:  5'- -gGGCGCCAAGGACGgcgagGaGUGCGaCg- -3'
miRNA:   3'- ugCUGCGGUUCCUGCa----C-CGCGCcGag -5'
23579 5' -60.4 NC_005261.1 + 21875 0.66 0.717229
Target:  5'- cGCGGCGgCAcGGACGaacccgcacggGGCGauggGGCUCu -3'
miRNA:   3'- -UGCUGCgGUuCCUGCa----------CCGCg---CCGAG- -5'
23579 5' -60.4 NC_005261.1 + 41870 0.66 0.70747
Target:  5'- cGCGgccGCGCCAggccagucAGGGCGUcaGGUGCGcGCg- -3'
miRNA:   3'- -UGC---UGCGGU--------UCCUGCA--CCGCGC-CGag -5'
23579 5' -60.4 NC_005261.1 + 31980 0.66 0.70747
Target:  5'- aGCGGCGgCGGcGGccCGguagGGCGCGGCg- -3'
miRNA:   3'- -UGCUGCgGUU-CCu-GCa---CCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 110003 0.66 0.70747
Target:  5'- cGCGcGCGCCGGGGGguagcUGgGGcCGCGGCa- -3'
miRNA:   3'- -UGC-UGCGGUUCCU-----GCaCC-GCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 60641 0.66 0.70747
Target:  5'- gGCGGCGggaagccguacCCGGGGuGCcagGGCGCGGCg- -3'
miRNA:   3'- -UGCUGC-----------GGUUCC-UGca-CCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 128250 0.67 0.607882
Target:  5'- gGCcGCGCCGAGGcGCGUccgggaggGGCG-GGCUUg -3'
miRNA:   3'- -UGcUGCGGUUCC-UGCA--------CCGCgCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 138106 0.67 0.607882
Target:  5'- cGCGAgCaCCAGGGGCGgcgccGGCGCgGGCg- -3'
miRNA:   3'- -UGCU-GcGGUUCCUGCa----CCGCG-CCGag -5'
23579 5' -60.4 NC_005261.1 + 127252 0.67 0.607882
Target:  5'- --aGCGCCAGucGGGCGcGGgGCGGCg- -3'
miRNA:   3'- ugcUGCGGUU--CCUGCaCCgCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 96028 0.67 0.607882
Target:  5'- -gGGCGCCcgcgcGGcgcCGUGGaGCGGCUCg -3'
miRNA:   3'- ugCUGCGGuu---CCu--GCACCgCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 79131 0.67 0.607882
Target:  5'- cGCGcGCGCCugcGAGcGCGagGGCGCGGCg- -3'
miRNA:   3'- -UGC-UGCGG---UUCcUGCa-CCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 67417 0.67 0.607882
Target:  5'- gGCG-CGCCcGGGGCcgccGGCGCGGaCUUu -3'
miRNA:   3'- -UGCuGCGGuUCCUGca--CCGCGCC-GAG- -5'
23579 5' -60.4 NC_005261.1 + 423 0.67 0.607882
Target:  5'- cGCGAgCaCCAGGGGCGgcgccGGCGCgGGCg- -3'
miRNA:   3'- -UGCU-GcGGUUCCUGCa----CCGCG-CCGag -5'
23579 5' -60.4 NC_005261.1 + 136889 0.67 0.607882
Target:  5'- -aGACGCUGgugcAGG-CGcGGCGCGGCg- -3'
miRNA:   3'- ugCUGCGGU----UCCuGCaCCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 7375 0.67 0.607882
Target:  5'- cGCGGCGCCc-GGcCG-GGCGCGcGCg- -3'
miRNA:   3'- -UGCUGCGGuuCCuGCaCCGCGC-CGag -5'
23579 5' -60.4 NC_005261.1 + 54068 0.67 0.607882
Target:  5'- cGCGGCGgCGGuGGugGcaggGGCGUGGC-Cg -3'
miRNA:   3'- -UGCUGCgGUU-CCugCa---CCGCGCCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.