miRNA display CGI


Results 121 - 140 of 544 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 30325 0.67 0.637915
Target:  5'- uCGugGCCGAGGcCGcGGCcGCGGaCa- -3'
miRNA:   3'- uGCugCGGUUCCuGCaCCG-CGCC-Gag -5'
23579 5' -60.4 NC_005261.1 + 25270 0.67 0.637915
Target:  5'- gGCGGcCGCCGuGGACa--GCGCGGCg- -3'
miRNA:   3'- -UGCU-GCGGUuCCUGcacCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 37321 0.67 0.637915
Target:  5'- gGCGACGCUcgcGGCG-GuGCGCGGCg- -3'
miRNA:   3'- -UGCUGCGGuucCUGCaC-CGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 423 0.67 0.607882
Target:  5'- cGCGAgCaCCAGGGGCGgcgccGGCGCgGGCg- -3'
miRNA:   3'- -UGCU-GcGGUUCCUGCa----CCGCG-CCGag -5'
23579 5' -60.4 NC_005261.1 + 20582 0.67 0.627899
Target:  5'- -gGGCGCUuagcggGGGGGCGcGGCGCGGg-- -3'
miRNA:   3'- ugCUGCGG------UUCCUGCaCCGCGCCgag -5'
23579 5' -60.4 NC_005261.1 + 97140 0.67 0.624894
Target:  5'- gACGACGCggucgacuggCGGGGGC-UGGCGgcggaccgcgccgcCGGCUCu -3'
miRNA:   3'- -UGCUGCG----------GUUCCUGcACCGC--------------GCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 136144 0.67 0.617885
Target:  5'- cGCGACGC--GGGACcUGGCcuuccGCGGCg- -3'
miRNA:   3'- -UGCUGCGguUCCUGcACCG-----CGCCGag -5'
23579 5' -60.4 NC_005261.1 + 78709 0.67 0.661923
Target:  5'- gGCGGCGgggcugcuCCAGGGcgcGCGUgcgaccgccgccgcuGGCGCGGCg- -3'
miRNA:   3'- -UGCUGC--------GGUUCC---UGCA---------------CCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 62521 0.67 0.657928
Target:  5'- gAUGGCGUCGAc--CGUGGCGCgcagcaGGCUCu -3'
miRNA:   3'- -UGCUGCGGUUccuGCACCGCG------CCGAG- -5'
23579 5' -60.4 NC_005261.1 + 18340 0.67 0.657928
Target:  5'- cGCGGCGCCAGGuGuacACGcccucGGCuGCGGCg- -3'
miRNA:   3'- -UGCUGCGGUUC-C---UGCa----CCG-CGCCGag -5'
23579 5' -60.4 NC_005261.1 + 105540 0.67 0.657928
Target:  5'- gGCGGgugggcuuuUGCgGAGGGCGgcgGGCGgCGGCg- -3'
miRNA:   3'- -UGCU---------GCGgUUCCUGCa--CCGC-GCCGag -5'
23579 5' -60.4 NC_005261.1 + 94702 0.67 0.657928
Target:  5'- uGCGGucguaGUCGAGGACGgucacGGCGCuGGCg- -3'
miRNA:   3'- -UGCUg----CGGUUCCUGCa----CCGCG-CCGag -5'
23579 5' -60.4 NC_005261.1 + 87506 0.67 0.657928
Target:  5'- uGCGGCGaCGAGGGCGaggaGGCGCGuuauGCgUCg -3'
miRNA:   3'- -UGCUGCgGUUCCUGCa---CCGCGC----CG-AG- -5'
23579 5' -60.4 NC_005261.1 + 48828 0.67 0.657928
Target:  5'- cACG-CGCCGAGGAa--GGCcgGCGGCa- -3'
miRNA:   3'- -UGCuGCGGUUCCUgcaCCG--CGCCGag -5'
23579 5' -60.4 NC_005261.1 + 128064 0.67 0.656929
Target:  5'- gGCGGCaggaGCCGucgcagguggggcAGGGC-UGGcCGUGGCUCa -3'
miRNA:   3'- -UGCUG----CGGU-------------UCCUGcACC-GCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 69239 0.67 0.656929
Target:  5'- cGCGGCGCCcgcgcggcccgaaAAGGGCcgcgGUGGCGCG-Ca- -3'
miRNA:   3'- -UGCUGCGG-------------UUCCUG----CACCGCGCcGag -5'
23579 5' -60.4 NC_005261.1 + 131760 0.67 0.617885
Target:  5'- -aGGCGCCuGGGGugG-GGCGgGGUg- -3'
miRNA:   3'- ugCUGCGG-UUCCugCaCCGCgCCGag -5'
23579 5' -60.4 NC_005261.1 + 5530 0.67 0.617885
Target:  5'- -gGGCGCC-GGGACG-GGCaCGGC-Ca -3'
miRNA:   3'- ugCUGCGGuUCCUGCaCCGcGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 98621 0.67 0.627899
Target:  5'- uGCG-CGaCGGGGGCGgcgggGGCGCGcggcGCUCg -3'
miRNA:   3'- -UGCuGCgGUUCCUGCa----CCGCGC----CGAG- -5'
23579 5' -60.4 NC_005261.1 + 45671 0.67 0.617885
Target:  5'- cGCGGCGCgcGGGGCGc-GCGCGGgaCa -3'
miRNA:   3'- -UGCUGCGguUCCUGCacCGCGCCgaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.