miRNA display CGI


Results 141 - 160 of 544 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 104980 0.67 0.657928
Target:  5'- cGCGACgGCCGgcGGGA--UGGCGCGGg-- -3'
miRNA:   3'- -UGCUG-CGGU--UCCUgcACCGCGCCgag -5'
23579 5' -60.4 NC_005261.1 + 51337 0.67 0.657928
Target:  5'- cGCGcCGCgCGcGGACcagGGCGCGGC-Ca -3'
miRNA:   3'- -UGCuGCG-GUuCCUGca-CCGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 69239 0.67 0.656929
Target:  5'- cGCGGCGCCcgcgcggcccgaaAAGGGCcgcgGUGGCGCG-Ca- -3'
miRNA:   3'- -UGCUGCGG-------------UUCCUG----CACCGCGCcGag -5'
23579 5' -60.4 NC_005261.1 + 29439 0.67 0.65393
Target:  5'- gGCGcACGCUgccaacuggAAGGugcccauggcugcCGUGGCGCGGCg- -3'
miRNA:   3'- -UGC-UGCGG---------UUCCu------------GCACCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 7375 0.67 0.607882
Target:  5'- cGCGGCGCCc-GGcCG-GGCGCGcGCg- -3'
miRNA:   3'- -UGCUGCGGuuCCuGCaCCGCGC-CGag -5'
23579 5' -60.4 NC_005261.1 + 5530 0.67 0.617885
Target:  5'- -gGGCGCC-GGGACG-GGCaCGGC-Ca -3'
miRNA:   3'- ugCUGCGGuUCCUGCaCCGcGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 45671 0.67 0.617885
Target:  5'- cGCGGCGCgcGGGGCGc-GCGCGGgaCa -3'
miRNA:   3'- -UGCUGCGguUCCUGCacCGCGCCgaG- -5'
23579 5' -60.4 NC_005261.1 + 136144 0.67 0.617885
Target:  5'- cGCGACGC--GGGACcUGGCcuuccGCGGCg- -3'
miRNA:   3'- -UGCUGCGguUCCUGcACCG-----CGCCGag -5'
23579 5' -60.4 NC_005261.1 + 97140 0.67 0.624894
Target:  5'- gACGACGCggucgacuggCGGGGGC-UGGCGgcggaccgcgccgcCGGCUCu -3'
miRNA:   3'- -UGCUGCG----------GUUCCUGcACCGC--------------GCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 20582 0.67 0.627899
Target:  5'- -gGGCGCUuagcggGGGGGCGcGGCGCGGg-- -3'
miRNA:   3'- ugCUGCGG------UUCCUGCaCCGCGCCgag -5'
23579 5' -60.4 NC_005261.1 + 46370 0.67 0.627899
Target:  5'- -gGACGCCGAGGugccgGCgGUGaGCGCGGg-- -3'
miRNA:   3'- ugCUGCGGUUCC-----UG-CAC-CGCGCCgag -5'
23579 5' -60.4 NC_005261.1 + 80668 0.67 0.637915
Target:  5'- cGCGGCGCCGGaGcCG-GGCGCGuGCg- -3'
miRNA:   3'- -UGCUGCGGUUcCuGCaCCGCGC-CGag -5'
23579 5' -60.4 NC_005261.1 + 42805 0.67 0.647928
Target:  5'- --uGCGUCGAGGccaGCGUGGCGuuGUUCu -3'
miRNA:   3'- ugcUGCGGUUCC---UGCACCGCgcCGAG- -5'
23579 5' -60.4 NC_005261.1 + 29284 0.67 0.647928
Target:  5'- uACG-CGCgCGAGGACGcGGCGUgcgugGGCg- -3'
miRNA:   3'- -UGCuGCG-GUUCCUGCaCCGCG-----CCGag -5'
23579 5' -60.4 NC_005261.1 + 128130 0.67 0.647928
Target:  5'- uCGcCGCCGcugccGGGGCGcGGCGgGGgUCg -3'
miRNA:   3'- uGCuGCGGU-----UCCUGCaCCGCgCCgAG- -5'
23579 5' -60.4 NC_005261.1 + 31203 0.67 0.647928
Target:  5'- cGCGugGCgCGcccugcuccuuGGGcACGUGGCGCucGGCg- -3'
miRNA:   3'- -UGCugCG-GU-----------UCC-UGCACCGCG--CCGag -5'
23579 5' -60.4 NC_005261.1 + 89418 0.67 0.647928
Target:  5'- gACGGCGUCGcGGACGccGCGCacGGcCUCa -3'
miRNA:   3'- -UGCUGCGGUuCCUGCacCGCG--CC-GAG- -5'
23579 5' -60.4 NC_005261.1 + 134796 0.67 0.647928
Target:  5'- cGCG-CGCCcgccuGGACGcUGGCccGCGcGCUCu -3'
miRNA:   3'- -UGCuGCGGuu---CCUGC-ACCG--CGC-CGAG- -5'
23579 5' -60.4 NC_005261.1 + 53195 0.67 0.647928
Target:  5'- cACGGCGaUCGuGGcCGgGGCGCGGCg- -3'
miRNA:   3'- -UGCUGC-GGUuCCuGCaCCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 78709 0.67 0.661923
Target:  5'- gGCGGCGgggcugcuCCAGGGcgcGCGUgcgaccgccgccgcuGGCGCGGCg- -3'
miRNA:   3'- -UGCUGC--------GGUUCC---UGCA---------------CCGCGCCGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.