miRNA display CGI


Results 21 - 40 of 544 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 113910 0.76 0.188928
Target:  5'- cGCGAUgGCCGAGGcaGCG-GGCGCGGCg- -3'
miRNA:   3'- -UGCUG-CGGUUCC--UGCaCCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 108167 0.76 0.188928
Target:  5'- cGCGucCGCCAGGGcGCGcGGcCGCGGCUCc -3'
miRNA:   3'- -UGCu-GCGGUUCC-UGCaCC-GCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 90869 0.76 0.203255
Target:  5'- uACGACGCCGucugcgcgcuGGGCGacggcaUGGCGCGGCa- -3'
miRNA:   3'- -UGCUGCGGUu---------CCUGC------ACCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 134186 0.76 0.208237
Target:  5'- ---uUGCgGAGGGCcUGGCGCGGCUCg -3'
miRNA:   3'- ugcuGCGgUUCCUGcACCGCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 70439 0.76 0.208237
Target:  5'- gGCGGCGCCGAGG-CGgaggagGGgGCGGC-Cg -3'
miRNA:   3'- -UGCUGCGGUUCCuGCa-----CCgCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 78635 0.76 0.208237
Target:  5'- cGCGcCGCgGAGGugGUggcGGCGCGGCa- -3'
miRNA:   3'- -UGCuGCGgUUCCugCA---CCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 56914 0.75 0.253755
Target:  5'- uACGGCacacauccgcaagGCCAcugagcccgucuucgAGGAgauCGUGGCGCGGCUCc -3'
miRNA:   3'- -UGCUG-------------CGGU---------------UCCU---GCACCGCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 136402 0.75 0.218516
Target:  5'- cGCGcGCGCCGAGGcCGcuuacGCGCGGCUCu -3'
miRNA:   3'- -UGC-UGCGGUUCCuGCac---CGCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 31885 0.75 0.243808
Target:  5'- cGCGGCGgCGGGGGCGgacgcggcggcggGGcCGUGGCUCa -3'
miRNA:   3'- -UGCUGCgGUUCCUGCa------------CC-GCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 36865 0.75 0.223817
Target:  5'- -aGGCGCCGGagcuGGACGUGGCcGCGGUg- -3'
miRNA:   3'- ugCUGCGGUU----CCUGCACCG-CGCCGag -5'
23579 5' -60.4 NC_005261.1 + 31793 0.75 0.234746
Target:  5'- gACGugGCCGAcugggcGGGCGUGGacCGCGGCcCg -3'
miRNA:   3'- -UGCugCGGUU------CCUGCACC--GCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 60691 0.75 0.236985
Target:  5'- gGCGGCGCCGuaccagcccggcaucGGGgGCGggGGCGCGGCg- -3'
miRNA:   3'- -UGCUGCGGU---------------UCC-UGCa-CCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 51639 0.75 0.251385
Target:  5'- cCGACGCCAAGGAC--GGCGCcgccgccGGCUUc -3'
miRNA:   3'- uGCUGCGGUUCCUGcaCCGCG-------CCGAG- -5'
23579 5' -60.4 NC_005261.1 + 17631 0.75 0.251975
Target:  5'- cACGGCGCCGAGGcCGcaGGCGaCGGC-Ca -3'
miRNA:   3'- -UGCUGCGGUUCCuGCa-CCGC-GCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 69770 0.75 0.236985
Target:  5'- gGCGGCGCCGGGGAC-UGagccgcucccgcggcGCGCGGCg- -3'
miRNA:   3'- -UGCUGCGGUUCCUGcAC---------------CGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 98332 0.75 0.238675
Target:  5'- gGCGGCGCgccccgugucgacgCGGGGGCGggggugGGCGCgGGCUCu -3'
miRNA:   3'- -UGCUGCG--------------GUUCCUGCa-----CCGCG-CCGAG- -5'
23579 5' -60.4 NC_005261.1 + 117169 0.75 0.251975
Target:  5'- gGCGGuCGCCAAGGACcccGGCGgGGCg- -3'
miRNA:   3'- -UGCU-GCGGUUCCUGca-CCGCgCCGag -5'
23579 5' -60.4 NC_005261.1 + 31189 0.75 0.251975
Target:  5'- gGCGGCcuacugccGCCccGAGGuCGcGGCGCGGCUCg -3'
miRNA:   3'- -UGCUG--------CGG--UUCCuGCaCCGCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 59464 0.75 0.251975
Target:  5'- cGCGGCGUCGGGGggcaGCGccGGCGCGGC-Cg -3'
miRNA:   3'- -UGCUGCGGUUCC----UGCa-CCGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 31885 0.75 0.218516
Target:  5'- cGCGcGCGCCGAGGcCGcuuacGCGCGGCUCu -3'
miRNA:   3'- -UGC-UGCGGUUCCuGCac---CGCGCCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.