miRNA display CGI


Results 41 - 60 of 544 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 17631 0.75 0.251975
Target:  5'- cACGGCGCCGAGGcCGcaGGCGaCGGC-Ca -3'
miRNA:   3'- -UGCUGCGGUUCCuGCa-CCGC-GCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 94752 0.74 0.264031
Target:  5'- cCGACGUggagaucugguuCGAGGACGUGGCGCcgcgcgaGCUCg -3'
miRNA:   3'- uGCUGCG------------GUUCCUGCACCGCGc------CGAG- -5'
23579 5' -60.4 NC_005261.1 + 1189 0.74 0.257946
Target:  5'- cCGGgGCCGGGGcCG-GGCGCGGCg- -3'
miRNA:   3'- uGCUgCGGUUCCuGCaCCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 110226 0.74 0.264031
Target:  5'- gGCGACGCCuccAGcGugGgcGGCGCGGCg- -3'
miRNA:   3'- -UGCUGCGGu--UC-CugCa-CCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 88261 0.74 0.287562
Target:  5'- gGCGGCGCCGGGGAUGacgacggcGccgccuccuuuuuuGCGCGGCUCc -3'
miRNA:   3'- -UGCUGCGGUUCCUGCa-------C--------------CGCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 105707 0.74 0.257946
Target:  5'- cCGGgGCCGGGGcCG-GGCGCGGCg- -3'
miRNA:   3'- uGCUgCGGUUCCuGCaCCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 97738 0.74 0.282987
Target:  5'- aACGGCuGgCAGGGGCGgGGCG-GGCUCg -3'
miRNA:   3'- -UGCUG-CgGUUCCUGCaCCGCgCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 65532 0.74 0.276551
Target:  5'- cGCGACGCUGGcGGACcUGGCGCgccGGUUCg -3'
miRNA:   3'- -UGCUGCGGUU-CCUGcACCGCG---CCGAG- -5'
23579 5' -60.4 NC_005261.1 + 61187 0.74 0.270233
Target:  5'- cGCGGuCGCCGAGGGcCGcGcGCGCGGcCUCg -3'
miRNA:   3'- -UGCU-GCGGUUCCU-GCaC-CGCGCC-GAG- -5'
23579 5' -60.4 NC_005261.1 + 34908 0.74 0.276551
Target:  5'- -gGACGCgGAGGuCGgGGCGCGGC-Ca -3'
miRNA:   3'- ugCUGCGgUUCCuGCaCCGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 82953 0.74 0.270233
Target:  5'- cGCGGCGCCGGGcggaaGACGUGGUGCGcGUc- -3'
miRNA:   3'- -UGCUGCGGUUC-----CUGCACCGCGC-CGag -5'
23579 5' -60.4 NC_005261.1 + 31598 0.74 0.264031
Target:  5'- gACGuCGCCGAGcuCGUcGCGCGGCUCc -3'
miRNA:   3'- -UGCuGCGGUUCcuGCAcCGCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 36246 0.74 0.264031
Target:  5'- uACGACGCCGugacguaccuggAGGGCGaccUGGCGgccgugcccCGGCUCg -3'
miRNA:   3'- -UGCUGCGGU------------UCCUGC---ACCGC---------GCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 14099 0.74 0.282987
Target:  5'- cGCGGuCGUCGAGGcagACG-GGCGuCGGCUCg -3'
miRNA:   3'- -UGCU-GCGGUUCC---UGCaCCGC-GCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 75391 0.74 0.270233
Target:  5'- gGCGcGCGCCAucGACGagGGCGCGGCcCg -3'
miRNA:   3'- -UGC-UGCGGUucCUGCa-CCGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 118493 0.74 0.276551
Target:  5'- uGCGGCGCUgcGGACccUGGCGCcGCUCg -3'
miRNA:   3'- -UGCUGCGGuuCCUGc-ACCGCGcCGAG- -5'
23579 5' -60.4 NC_005261.1 + 60931 0.74 0.270233
Target:  5'- gGCGGCGaCCcgcGGGcCGUGGCccgaGCGGCUCu -3'
miRNA:   3'- -UGCUGC-GGu--UCCuGCACCG----CGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 55770 0.73 0.309915
Target:  5'- gACGGgGCCGGGGGCGgcaacggcGGCGCGGggCc -3'
miRNA:   3'- -UGCUgCGGUUCCUGCa-------CCGCGCCgaG- -5'
23579 5' -60.4 NC_005261.1 + 56125 0.73 0.324094
Target:  5'- aGCG-CGCCGcAGGGCGgggGGCGCGGg-- -3'
miRNA:   3'- -UGCuGCGGU-UCCUGCa--CCGCGCCgag -5'
23579 5' -60.4 NC_005261.1 + 118921 0.73 0.309915
Target:  5'- cCGGCGCCGcGGGCGcGGCgccgcGCGGCUg -3'
miRNA:   3'- uGCUGCGGUuCCUGCaCCG-----CGCCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.