Results 81 - 100 of 544 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23579 | 5' | -60.4 | NC_005261.1 | + | 118669 | 0.72 | 0.377461 |
Target: 5'- uCGGgGCUGAGGGCGgcgGGCGCuGGCg- -3' miRNA: 3'- uGCUgCGGUUCCUGCa--CCGCG-CCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 111589 | 0.72 | 0.361625 |
Target: 5'- uCGAgGCCGAGcacGCGgagugGGCGCGGCUg -3' miRNA: 3'- uGCUgCGGUUCc--UGCa----CCGCGCCGAg -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 103915 | 0.72 | 0.361625 |
Target: 5'- cGCGcCGCC-AGGuCG-GGCGCGGCg- -3' miRNA: 3'- -UGCuGCGGuUCCuGCaCCGCGCCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 98393 | 0.72 | 0.361625 |
Target: 5'- cCGGCG-UggGGGCG-GGCGCGGaCUCu -3' miRNA: 3'- uGCUGCgGuuCCUGCaCCGCGCC-GAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 95659 | 0.72 | 0.353882 |
Target: 5'- cGCGGCGCCGc-GACG-GGCGCGGgUg -3' miRNA: 3'- -UGCUGCGGUucCUGCaCCGCGCCgAg -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 88753 | 0.72 | 0.369485 |
Target: 5'- -gGACGCCAuGGugGcGGCGCuGcGCUCc -3' miRNA: 3'- ugCUGCGGUuCCugCaCCGCG-C-CGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 63775 | 0.72 | 0.353882 |
Target: 5'- --cACGCCGAGGuccACGUGcgcGCGCGGCUg -3' miRNA: 3'- ugcUGCGGUUCC---UGCAC---CGCGCCGAg -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 39785 | 0.72 | 0.346257 |
Target: 5'- gACGuCGCCGGGGG-GcGGCGCGGC-Cg -3' miRNA: 3'- -UGCuGCGGUUCCUgCaCCGCGCCGaG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 57993 | 0.72 | 0.33875 |
Target: 5'- cGCGcCGCCAaaaagcgccAGGACGUGGaagugcCGCGGCg- -3' miRNA: 3'- -UGCuGCGGU---------UCCUGCACC------GCGCCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 58080 | 0.72 | 0.33875 |
Target: 5'- gGCGGCGCCAGGGcccGCGUccucGG-GCGGCa- -3' miRNA: 3'- -UGCUGCGGUUCC---UGCA----CCgCGCCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 22058 | 0.72 | 0.376658 |
Target: 5'- aGCGGCGUCGGGGACGcGGCcgcgaccGCGcGCUg -3' miRNA: 3'- -UGCUGCGGUUCCUGCaCCG-------CGC-CGAg -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 50277 | 0.72 | 0.369485 |
Target: 5'- cCGcCGCCGgcGGGcCGUGGCggcgcGCGGCUCc -3' miRNA: 3'- uGCuGCGGU--UCCuGCACCG-----CGCCGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 88211 | 0.72 | 0.358514 |
Target: 5'- cGCGGCGgCu-GGGCGcccgcgcgcuggcGGCGCGGCUCg -3' miRNA: 3'- -UGCUGCgGuuCCUGCa------------CCGCGCCGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 55199 | 0.72 | 0.353882 |
Target: 5'- cGCGGCGagcggcccucCCGGGGGCGccGGCgacgGCGGCUCg -3' miRNA: 3'- -UGCUGC----------GGUUCCUGCa-CCG----CGCCGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 79869 | 0.72 | 0.346257 |
Target: 5'- gACGuCGCCGcacaccuGGACuGgccGGCGCGGCUCc -3' miRNA: 3'- -UGCuGCGGUu------CCUG-Ca--CCGCGCCGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 62920 | 0.72 | 0.346257 |
Target: 5'- cGCG-CGCCGccGACgGUGGCGCGGUg- -3' miRNA: 3'- -UGCuGCGGUucCUG-CACCGCGCCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 122856 | 0.72 | 0.33875 |
Target: 5'- gGCGGCGCCGAGGGCGccGaGCGCcGC-Cg -3' miRNA: 3'- -UGCUGCGGUUCCUGCa-C-CGCGcCGaG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 34648 | 0.71 | 0.41904 |
Target: 5'- cACGGCGgCGAGcGACGgcgcgGGCGgCGGCg- -3' miRNA: 3'- -UGCUGCgGUUC-CUGCa----CCGC-GCCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 67680 | 0.71 | 0.41904 |
Target: 5'- cGCGGCGCCcugcggcGGGugG-GGCGCgGGCg- -3' miRNA: 3'- -UGCUGCGGu------UCCugCaCCGCG-CCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 127188 | 0.71 | 0.41904 |
Target: 5'- gGCGGCGCCcgagugccgccgGGGGACG-GGCcCGGCg- -3' miRNA: 3'- -UGCUGCGG------------UUCCUGCaCCGcGCCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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