miRNA display CGI


Results 121 - 140 of 544 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 43769 0.71 0.402075
Target:  5'- gACGACGCCGacgcggaggGGGACGcGGaCGCGGaCg- -3'
miRNA:   3'- -UGCUGCGGU---------UCCUGCaCC-GCGCC-Gag -5'
23579 5' -60.4 NC_005261.1 + 86924 0.71 0.393757
Target:  5'- gGCGGCGCCGgcgugcgcgAGGuAgGUGGCcGCGGC-Ca -3'
miRNA:   3'- -UGCUGCGGU---------UCC-UgCACCG-CGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 46762 0.71 0.393757
Target:  5'- gGCGGCGCCGcuGGGAgGcgcgGGCGgGGC-Cg -3'
miRNA:   3'- -UGCUGCGGU--UCCUgCa---CCGCgCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 60733 0.71 0.388821
Target:  5'- gGCGAUGgCGggcggcaggaaguacGGGGCGggcgggGGCGCGGCUg -3'
miRNA:   3'- -UGCUGCgGU---------------UCCUGCa-----CCGCGCCGAg -5'
23579 5' -60.4 NC_005261.1 + 52795 0.71 0.388821
Target:  5'- gGCGGCGCCAAcaugucGGAgGcGGCGCgcgcgcgcgugcucgGGCUCg -3'
miRNA:   3'- -UGCUGCGGUU------CCUgCaCCGCG---------------CCGAG- -5'
23579 5' -60.4 NC_005261.1 + 68943 0.71 0.385552
Target:  5'- gGCGccccGCGCCGGGGucgGCGcGG-GCGGCUCg -3'
miRNA:   3'- -UGC----UGCGGUUCC---UGCaCCgCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 34648 0.71 0.41904
Target:  5'- cACGGCGgCGAGcGACGgcgcgGGCGgCGGCg- -3'
miRNA:   3'- -UGCUGCgGUUC-CUGCa----CCGC-GCCGag -5'
23579 5' -60.4 NC_005261.1 + 67680 0.71 0.41904
Target:  5'- cGCGGCGCCcugcggcGGGugG-GGCGCgGGCg- -3'
miRNA:   3'- -UGCUGCGGu------UCCugCaCCGCG-CCGag -5'
23579 5' -60.4 NC_005261.1 + 87408 0.71 0.393757
Target:  5'- gACGGCGCCGucGACG-GGCGCgccGGCg- -3'
miRNA:   3'- -UGCUGCGGUucCUGCaCCGCG---CCGag -5'
23579 5' -60.4 NC_005261.1 + 80902 0.71 0.431171
Target:  5'- aACGGCGCCggcuggcagcugcgaGucauggacgAGGACGUcGCGCGGCUg -3'
miRNA:   3'- -UGCUGCGG---------------U---------UCCUGCAcCGCGCCGAg -5'
23579 5' -60.4 NC_005261.1 + 32277 0.71 0.431171
Target:  5'- -gGGCGCCGAGGccaucgACGgcgcgcucgcggagGGCGCGGCg- -3'
miRNA:   3'- ugCUGCGGUUCC------UGCa-------------CCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 128640 0.71 0.427684
Target:  5'- cCGAgGCgGGGGugGgggcugggugGGCGgGGCUCa -3'
miRNA:   3'- uGCUgCGgUUCCugCa---------CCGCgCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 67990 0.71 0.427684
Target:  5'- aGCG-CGCCGAGGuCGaguuUGcGCGCGGCg- -3'
miRNA:   3'- -UGCuGCGGUUCCuGC----AC-CGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 37285 0.71 0.427684
Target:  5'- cGCGcGCGCCGuGGACGcgGGCcugcaGCGGCUg -3'
miRNA:   3'- -UGC-UGCGGUuCCUGCa-CCG-----CGCCGAg -5'
23579 5' -60.4 NC_005261.1 + 122967 0.71 0.427684
Target:  5'- gGCGGCGCCGccGGGGCGau-CGCGGCcCa -3'
miRNA:   3'- -UGCUGCGGU--UCCUGCaccGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 68610 0.71 0.427684
Target:  5'- aGCGcACGCCGugccGGGCGgcgGGCGCGcGgUCg -3'
miRNA:   3'- -UGC-UGCGGUu---CCUGCa--CCGCGC-CgAG- -5'
23579 5' -60.4 NC_005261.1 + 55490 0.71 0.427684
Target:  5'- cGCGAuCGCagacGGGC-UGGCGCGGCUg -3'
miRNA:   3'- -UGCU-GCGguu-CCUGcACCGCGCCGAg -5'
23579 5' -60.4 NC_005261.1 + 89601 0.71 0.424214
Target:  5'- cCGGCG-CAGGGGCGgggcguggggcugGGCGCGGC-Cg -3'
miRNA:   3'- uGCUGCgGUUCCUGCa------------CCGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 34069 0.71 0.41904
Target:  5'- cGCGGCGCCcgcGGAC--GGCGCGGUg- -3'
miRNA:   3'- -UGCUGCGGuu-CCUGcaCCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 127188 0.71 0.41904
Target:  5'- gGCGGCGCCcgagugccgccgGGGGACG-GGCcCGGCg- -3'
miRNA:   3'- -UGCUGCGG------------UUCCUGCaCCGcGCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.