miRNA display CGI


Results 61 - 80 of 544 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 6424 0.73 0.296213
Target:  5'- gGCGgcGCGCCGucAGGcGCGgcgGGCGCGGCgUCg -3'
miRNA:   3'- -UGC--UGCGGU--UCC-UGCa--CCGCGCCG-AG- -5'
23579 5' -60.4 NC_005261.1 + 12077 0.73 0.296213
Target:  5'- aGCGGCGuCCGcgccGGGGCGgcucaaaGGCGCGGCg- -3'
miRNA:   3'- -UGCUGC-GGU----UCCUGCa------CCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 103150 0.73 0.303004
Target:  5'- cGCGGCuCCGAGGGCGagggGGCGCGGa-- -3'
miRNA:   3'- -UGCUGcGGUUCCUGCa---CCGCGCCgag -5'
23579 5' -60.4 NC_005261.1 + 11756 0.73 0.303004
Target:  5'- gGCGGCGCgguacuaccgCGAGGcgagcGCGcUGGCGCGGCUg -3'
miRNA:   3'- -UGCUGCG----------GUUCC-----UGC-ACCGCGCCGAg -5'
23579 5' -60.4 NC_005261.1 + 46018 0.73 0.303004
Target:  5'- gGCGAUGuCCGggagcAGGACGggGGCGCGGUa- -3'
miRNA:   3'- -UGCUGC-GGU-----UCCUGCa-CCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 43198 0.73 0.303004
Target:  5'- uGCGGCGCCGAGcGcCGccGGCGgCGGCUUu -3'
miRNA:   3'- -UGCUGCGGUUC-CuGCa-CCGC-GCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 34768 0.73 0.303004
Target:  5'- -gGACGCCcuGGcGACG-GGCGCGGCg- -3'
miRNA:   3'- ugCUGCGGu-UC-CUGCaCCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 83741 0.73 0.309915
Target:  5'- gACGGCGUCGAGGugGcGGCGCgccacGGC-Cg -3'
miRNA:   3'- -UGCUGCGGUUCCugCaCCGCG-----CCGaG- -5'
23579 5' -60.4 NC_005261.1 + 118921 0.73 0.309915
Target:  5'- cCGGCGCCGcGGGCGcGGCgccgcGCGGCUg -3'
miRNA:   3'- uGCUGCGGUuCCUGCaCCG-----CGCCGAg -5'
23579 5' -60.4 NC_005261.1 + 90303 0.73 0.309915
Target:  5'- cGCGGCGCgcGGGACGUGacggccGCGCGGUUg -3'
miRNA:   3'- -UGCUGCGguUCCUGCAC------CGCGCCGAg -5'
23579 5' -60.4 NC_005261.1 + 55770 0.73 0.309915
Target:  5'- gACGGgGCCGGGGGCGgcaacggcGGCGCGGggCc -3'
miRNA:   3'- -UGCUgCGGUUCCUGCa-------CCGCGCCgaG- -5'
23579 5' -60.4 NC_005261.1 + 75541 0.73 0.321937
Target:  5'- cACGcuGCGCCGGcgcgugcagcuggcGGACGUGGCGCuGGcCUCc -3'
miRNA:   3'- -UGC--UGCGGUU--------------CCUGCACCGCG-CC-GAG- -5'
23579 5' -60.4 NC_005261.1 + 65190 0.73 0.324094
Target:  5'- -aGGCGCgGGGGgcGCGUGGCGCgacGGCUg -3'
miRNA:   3'- ugCUGCGgUUCC--UGCACCGCG---CCGAg -5'
23579 5' -60.4 NC_005261.1 + 31108 0.73 0.324094
Target:  5'- -gGGCGCCGucgccGGcGCgGUGGCGCGGCUg -3'
miRNA:   3'- ugCUGCGGUu----CC-UG-CACCGCGCCGAg -5'
23579 5' -60.4 NC_005261.1 + 67000 0.73 0.324094
Target:  5'- uGCGcCGCCGAGGgccGCGUGcGCGCGcGCa- -3'
miRNA:   3'- -UGCuGCGGUUCC---UGCAC-CGCGC-CGag -5'
23579 5' -60.4 NC_005261.1 + 56125 0.73 0.324094
Target:  5'- aGCG-CGCCGcAGGGCGgggGGCGCGGg-- -3'
miRNA:   3'- -UGCuGCGGU-UCCUGCa--CCGCGCCgag -5'
23579 5' -60.4 NC_005261.1 + 35125 0.73 0.331362
Target:  5'- cUGGCGCCGGGGGCGcUGGC-CgGGCUg -3'
miRNA:   3'- uGCUGCGGUUCCUGC-ACCGcG-CCGAg -5'
23579 5' -60.4 NC_005261.1 + 122856 0.72 0.33875
Target:  5'- gGCGGCGCCGAGGGCGccGaGCGCcGC-Cg -3'
miRNA:   3'- -UGCUGCGGUUCCUGCa-C-CGCGcCGaG- -5'
23579 5' -60.4 NC_005261.1 + 57993 0.72 0.33875
Target:  5'- cGCGcCGCCAaaaagcgccAGGACGUGGaagugcCGCGGCg- -3'
miRNA:   3'- -UGCuGCGGU---------UCCUGCACC------GCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 58080 0.72 0.33875
Target:  5'- gGCGGCGCCAGGGcccGCGUccucGG-GCGGCa- -3'
miRNA:   3'- -UGCUGCGGUUCC---UGCA----CCgCGCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.