miRNA display CGI


Results 81 - 100 of 544 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 71837 0.72 0.341739
Target:  5'- gACGACGCCuucuuccugaaaagaGcgagGGGGCGccggGGCGCGaGCUCg -3'
miRNA:   3'- -UGCUGCGG---------------U----UCCUGCa---CCGCGC-CGAG- -5'
23579 5' -60.4 NC_005261.1 + 39785 0.72 0.346257
Target:  5'- gACGuCGCCGGGGG-GcGGCGCGGC-Cg -3'
miRNA:   3'- -UGCuGCGGUUCCUgCaCCGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 62920 0.72 0.346257
Target:  5'- cGCG-CGCCGccGACgGUGGCGCGGUg- -3'
miRNA:   3'- -UGCuGCGGUucCUG-CACCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 79869 0.72 0.346257
Target:  5'- gACGuCGCCGcacaccuGGACuGgccGGCGCGGCUCc -3'
miRNA:   3'- -UGCuGCGGUu------CCUG-Ca--CCGCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 63775 0.72 0.353882
Target:  5'- --cACGCCGAGGuccACGUGcgcGCGCGGCUg -3'
miRNA:   3'- ugcUGCGGUUCC---UGCAC---CGCGCCGAg -5'
23579 5' -60.4 NC_005261.1 + 95659 0.72 0.353882
Target:  5'- cGCGGCGCCGc-GACG-GGCGCGGgUg -3'
miRNA:   3'- -UGCUGCGGUucCUGCaCCGCGCCgAg -5'
23579 5' -60.4 NC_005261.1 + 55199 0.72 0.353882
Target:  5'- cGCGGCGagcggcccucCCGGGGGCGccGGCgacgGCGGCUCg -3'
miRNA:   3'- -UGCUGC----------GGUUCCUGCa-CCG----CGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 88211 0.72 0.358514
Target:  5'- cGCGGCGgCu-GGGCGcccgcgcgcuggcGGCGCGGCUCg -3'
miRNA:   3'- -UGCUGCgGuuCCUGCa------------CCGCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 98393 0.72 0.361625
Target:  5'- cCGGCG-UggGGGCG-GGCGCGGaCUCu -3'
miRNA:   3'- uGCUGCgGuuCCUGCaCCGCGCC-GAG- -5'
23579 5' -60.4 NC_005261.1 + 103915 0.72 0.361625
Target:  5'- cGCGcCGCC-AGGuCG-GGCGCGGCg- -3'
miRNA:   3'- -UGCuGCGGuUCCuGCaCCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 111589 0.72 0.361625
Target:  5'- uCGAgGCCGAGcacGCGgagugGGCGCGGCUg -3'
miRNA:   3'- uGCUgCGGUUCc--UGCa----CCGCGCCGAg -5'
23579 5' -60.4 NC_005261.1 + 50277 0.72 0.369485
Target:  5'- cCGcCGCCGgcGGGcCGUGGCggcgcGCGGCUCc -3'
miRNA:   3'- uGCuGCGGU--UCCuGCACCG-----CGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 88753 0.72 0.369485
Target:  5'- -gGACGCCAuGGugGcGGCGCuGcGCUCc -3'
miRNA:   3'- ugCUGCGGUuCCugCaCCGCG-C-CGAG- -5'
23579 5' -60.4 NC_005261.1 + 75874 0.72 0.369485
Target:  5'- gACGGCGCCGuGGGCGcGcGCaGCGGCg- -3'
miRNA:   3'- -UGCUGCGGUuCCUGCaC-CG-CGCCGag -5'
23579 5' -60.4 NC_005261.1 + 22058 0.72 0.376658
Target:  5'- aGCGGCGUCGGGGACGcGGCcgcgaccGCGcGCUg -3'
miRNA:   3'- -UGCUGCGGUUCCUGCaCCG-------CGC-CGAg -5'
23579 5' -60.4 NC_005261.1 + 41637 0.72 0.377461
Target:  5'- uCGGCGaCCuuGAGGugcGCGUGGagGCGGCUCa -3'
miRNA:   3'- uGCUGC-GG--UUCC---UGCACCg-CGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 118669 0.72 0.377461
Target:  5'- uCGGgGCUGAGGGCGgcgGGCGCuGGCg- -3'
miRNA:   3'- uGCUgCGGUUCCUGCa--CCGCG-CCGag -5'
23579 5' -60.4 NC_005261.1 + 125880 0.71 0.384738
Target:  5'- gGCGGCGCCcuuggcugAAGGcGCcugagccagauguGUGGCGgGGCUCg -3'
miRNA:   3'- -UGCUGCGG--------UUCC-UG-------------CACCGCgCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 53593 0.71 0.384738
Target:  5'- gGCGGCGCCccagcggaccgacGAGGcCGUGGC-CaGGCUCc -3'
miRNA:   3'- -UGCUGCGG-------------UUCCuGCACCGcG-CCGAG- -5'
23579 5' -60.4 NC_005261.1 + 32184 0.71 0.385552
Target:  5'- cGCGGCGCUAGGGcCGggcaGCGCGGUg- -3'
miRNA:   3'- -UGCUGCGGUUCCuGCac--CGCGCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.