miRNA display CGI


Results 101 - 120 of 544 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 59021 0.71 0.385552
Target:  5'- aGCGGCGCCGccAGGAacggGUGccgccGCGCGaGCUCa -3'
miRNA:   3'- -UGCUGCGGU--UCCUg---CAC-----CGCGC-CGAG- -5'
23579 5' -60.4 NC_005261.1 + 32184 0.71 0.385552
Target:  5'- cGCGGCGCUAGGGcCGggcaGCGCGGUg- -3'
miRNA:   3'- -UGCUGCGGUUCCuGCac--CGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 60733 0.71 0.388821
Target:  5'- gGCGAUGgCGggcggcaggaaguacGGGGCGggcgggGGCGCGGCUg -3'
miRNA:   3'- -UGCUGCgGU---------------UCCUGCa-----CCGCGCCGAg -5'
23579 5' -60.4 NC_005261.1 + 52795 0.71 0.388821
Target:  5'- gGCGGCGCCAAcaugucGGAgGcGGCGCgcgcgcgcgugcucgGGCUCg -3'
miRNA:   3'- -UGCUGCGGUU------CCUgCaCCGCG---------------CCGAG- -5'
23579 5' -60.4 NC_005261.1 + 33747 0.71 0.393757
Target:  5'- cGCGGCGCCGGGGccgggcccgcucGCGgGGCccGCGGCg- -3'
miRNA:   3'- -UGCUGCGGUUCC------------UGCaCCG--CGCCGag -5'
23579 5' -60.4 NC_005261.1 + 118801 0.71 0.393757
Target:  5'- gAUGGCGCaCGuGGGCGUcugcgcccugGGCGCGGCa- -3'
miRNA:   3'- -UGCUGCG-GUuCCUGCA----------CCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 50997 0.71 0.393757
Target:  5'- gGCGGCGCgu-GGGCGcGGCGgGaGCUCg -3'
miRNA:   3'- -UGCUGCGguuCCUGCaCCGCgC-CGAG- -5'
23579 5' -60.4 NC_005261.1 + 87408 0.71 0.393757
Target:  5'- gACGGCGCCGucGACG-GGCGCgccGGCg- -3'
miRNA:   3'- -UGCUGCGGUucCUGCaCCGCG---CCGag -5'
23579 5' -60.4 NC_005261.1 + 46762 0.71 0.393757
Target:  5'- gGCGGCGCCGcuGGGAgGcgcgGGCGgGGC-Cg -3'
miRNA:   3'- -UGCUGCGGU--UCCUgCa---CCGCgCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 86924 0.71 0.393757
Target:  5'- gGCGGCGCCGgcgugcgcgAGGuAgGUGGCcGCGGC-Ca -3'
miRNA:   3'- -UGCUGCGGU---------UCC-UgCACCG-CGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 37206 0.71 0.401238
Target:  5'- gGCGGCGCUAcuguggcucccgcGGGcuuGCGcGGCGCGGCg- -3'
miRNA:   3'- -UGCUGCGGU-------------UCC---UGCaCCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 98676 0.71 0.402075
Target:  5'- gGCGGgcucCGCCGGGGcCGgaGGCGCGGC-Cg -3'
miRNA:   3'- -UGCU----GCGGUUCCuGCa-CCGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 63593 0.71 0.402075
Target:  5'- aGCGGCGC--GGGGCccuGUGGCcggauGCGGCUCc -3'
miRNA:   3'- -UGCUGCGguUCCUG---CACCG-----CGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 43769 0.71 0.402075
Target:  5'- gACGACGCCGacgcggaggGGGACGcGGaCGCGGaCg- -3'
miRNA:   3'- -UGCUGCGGU---------UCCUGCaCC-GCGCC-Gag -5'
23579 5' -60.4 NC_005261.1 + 130492 0.71 0.402075
Target:  5'- gGCGGCGagggccCCGAcGACGUGGCGCaGGCg- -3'
miRNA:   3'- -UGCUGC------GGUUcCUGCACCGCG-CCGag -5'
23579 5' -60.4 NC_005261.1 + 94368 0.71 0.402075
Target:  5'- cGCGcCGCCGAGGACGa--CGCGGC-Cg -3'
miRNA:   3'- -UGCuGCGGUUCCUGCaccGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 126939 0.71 0.410503
Target:  5'- aGCG-CgGCCAGGGGCGccgGGCGCGGg-- -3'
miRNA:   3'- -UGCuG-CGGUUCCUGCa--CCGCGCCgag -5'
23579 5' -60.4 NC_005261.1 + 93681 0.71 0.410503
Target:  5'- gGCGGCGCCGgcGGGGCGccGGCGgGuGcCUCu -3'
miRNA:   3'- -UGCUGCGGU--UCCUGCa-CCGCgC-C-GAG- -5'
23579 5' -60.4 NC_005261.1 + 103113 0.71 0.410503
Target:  5'- uGCGACGCCGccGGCGgcUGGgG-GGCUCg -3'
miRNA:   3'- -UGCUGCGGUucCUGC--ACCgCgCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 9495 0.71 0.410503
Target:  5'- gACGAUGCCGAcagcuacggcGGGCG-GGCGgGGCcCg -3'
miRNA:   3'- -UGCUGCGGUU----------CCUGCaCCGCgCCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.