miRNA display CGI


Results 121 - 140 of 544 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 45174 0.71 0.413905
Target:  5'- cGCGugGCCAgcgagaacagcuucgAGGgccGCGUGuGCGCgGGCUUg -3'
miRNA:   3'- -UGCugCGGU---------------UCC---UGCAC-CGCG-CCGAG- -5'
23579 5' -60.4 NC_005261.1 + 43409 0.71 0.417324
Target:  5'- -aGGCGCCGGGGGCGgccuccgccgccGGCGgggagcUGGCUCg -3'
miRNA:   3'- ugCUGCGGUUCCUGCa-----------CCGC------GCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 30469 0.71 0.418181
Target:  5'- uGCG-CGCCAgcgagcgcuGGGGCGUGGCcccccccGCGGC-Cg -3'
miRNA:   3'- -UGCuGCGGU---------UCCUGCACCG-------CGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 128796 0.71 0.41904
Target:  5'- -gGGCGCCcGGGccCGcGGCGgGGCUCg -3'
miRNA:   3'- ugCUGCGGuUCCu-GCaCCGCgCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 10652 0.71 0.41904
Target:  5'- -aGACGCCcAGGGCGcccUGGUGCGGg-- -3'
miRNA:   3'- ugCUGCGGuUCCUGC---ACCGCGCCgag -5'
23579 5' -60.4 NC_005261.1 + 79918 0.71 0.41904
Target:  5'- -aGGCaCC-AGGACGUGGCcagGCGGCUg -3'
miRNA:   3'- ugCUGcGGuUCCUGCACCG---CGCCGAg -5'
23579 5' -60.4 NC_005261.1 + 22671 0.71 0.41904
Target:  5'- gGCGGCGCCcgagugccgccgGGGGACG-GGCcCGGCg- -3'
miRNA:   3'- -UGCUGCGG------------UUCCUGCaCCGcGCCGag -5'
23579 5' -60.4 NC_005261.1 + 34069 0.71 0.41904
Target:  5'- cGCGGCGCCcgcGGAC--GGCGCGGUg- -3'
miRNA:   3'- -UGCUGCGGuu-CCUGcaCCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 127188 0.71 0.41904
Target:  5'- gGCGGCGCCcgagugccgccgGGGGACG-GGCcCGGCg- -3'
miRNA:   3'- -UGCUGCGG------------UUCCUGCaCCGcGCCGag -5'
23579 5' -60.4 NC_005261.1 + 67680 0.71 0.41904
Target:  5'- cGCGGCGCCcugcggcGGGugG-GGCGCgGGCg- -3'
miRNA:   3'- -UGCUGCGGu------UCCugCaCCGCG-CCGag -5'
23579 5' -60.4 NC_005261.1 + 34648 0.71 0.41904
Target:  5'- cACGGCGgCGAGcGACGgcgcgGGCGgCGGCg- -3'
miRNA:   3'- -UGCUGCgGUUC-CUGCa----CCGC-GCCGag -5'
23579 5' -60.4 NC_005261.1 + 99517 0.71 0.41904
Target:  5'- -gGGCGCUggGGGCGcgggccUGGC-CGGCUUg -3'
miRNA:   3'- ugCUGCGGuuCCUGC------ACCGcGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 89601 0.71 0.424214
Target:  5'- cCGGCG-CAGGGGCGgggcguggggcugGGCGCGGC-Cg -3'
miRNA:   3'- uGCUGCgGUUCCUGCa------------CCGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 48348 0.71 0.426815
Target:  5'- gGCGAgGCCGAGGAgccggcuccacuuCGggaGGCGCaGGCUg -3'
miRNA:   3'- -UGCUgCGGUUCCU-------------GCa--CCGCG-CCGAg -5'
23579 5' -60.4 NC_005261.1 + 24122 0.71 0.427684
Target:  5'- cCGAgGCgGGGGugGgggcugggugGGCGgGGCUCa -3'
miRNA:   3'- uGCUgCGgUUCCugCa---------CCGCgCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 55490 0.71 0.427684
Target:  5'- cGCGAuCGCagacGGGC-UGGCGCGGCUg -3'
miRNA:   3'- -UGCU-GCGguu-CCUGcACCGCGCCGAg -5'
23579 5' -60.4 NC_005261.1 + 68610 0.71 0.427684
Target:  5'- aGCGcACGCCGugccGGGCGgcgGGCGCGcGgUCg -3'
miRNA:   3'- -UGC-UGCGGUu---CCUGCa--CCGCGC-CgAG- -5'
23579 5' -60.4 NC_005261.1 + 37285 0.71 0.427684
Target:  5'- cGCGcGCGCCGuGGACGcgGGCcugcaGCGGCUg -3'
miRNA:   3'- -UGC-UGCGGUuCCUGCa-CCG-----CGCCGAg -5'
23579 5' -60.4 NC_005261.1 + 67990 0.71 0.427684
Target:  5'- aGCG-CGCCGAGGuCGaguuUGcGCGCGGCg- -3'
miRNA:   3'- -UGCuGCGGUUCCuGC----AC-CGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 128640 0.71 0.427684
Target:  5'- cCGAgGCgGGGGugGgggcugggugGGCGgGGCUCa -3'
miRNA:   3'- uGCUgCGgUUCCugCa---------CCGCgCCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.