Results 61 - 80 of 544 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23579 | 5' | -60.4 | NC_005261.1 | + | 69057 | 0.66 | 0.696665 |
Target: 5'- gACGGUGCCcucgucaAGGGGCGcggcGGCGCGGUg- -3' miRNA: 3'- -UGCUGCGG-------UUCCUGCa---CCGCGCCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 28226 | 0.66 | 0.696665 |
Target: 5'- gGCGGCGCCGGcGGGCGUGuccacgacgaccuGCcGgGGCg- -3' miRNA: 3'- -UGCUGCGGUU-CCUGCAC-------------CG-CgCCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 4343 | 0.66 | 0.691732 |
Target: 5'- aGCG-CGCCGcGGGCuugcgcagaccacagGUaGGCGCGGCa- -3' miRNA: 3'- -UGCuGCGGUuCCUG---------------CA-CCGCGCCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 29804 | 0.66 | 0.687778 |
Target: 5'- cCGGCGCCGGcGGCGcgGGCGCccgcgccgcGCUCg -3' miRNA: 3'- uGCUGCGGUUcCUGCa-CCGCGc--------CGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 50801 | 0.66 | 0.687778 |
Target: 5'- cCGGCGCCGccgccauGACGggcuccGCGCGGCUUg -3' miRNA: 3'- uGCUGCGGUuc-----CUGCac----CGCGCCGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 112454 | 0.66 | 0.687778 |
Target: 5'- uGCGACGUgcGGGcCGUGcuaaacauGCGCGGCa- -3' miRNA: 3'- -UGCUGCGguUCCuGCAC--------CGCGCCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 134321 | 0.66 | 0.687778 |
Target: 5'- cCGGCGCCGGcGGCGcgGGCGCccgcgccgcGCUCg -3' miRNA: 3'- uGCUGCGGUUcCUGCa-CCGCGc--------CGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 97670 | 0.66 | 0.687778 |
Target: 5'- cCGGCGUCcgcGGGGCuugGGCGgGGCUg -3' miRNA: 3'- uGCUGCGGu--UCCUGca-CCGCgCCGAg -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 14965 | 0.66 | 0.687778 |
Target: 5'- gGCG-UGCCuGGGGCGacuGCGCGGC-Cg -3' miRNA: 3'- -UGCuGCGGuUCCUGCac-CGCGCCGaG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 62368 | 0.66 | 0.687778 |
Target: 5'- cACGGCGCCGucGGGGCcgccGUcGGCGCcGCg- -3' miRNA: 3'- -UGCUGCGGU--UCCUG----CA-CCGCGcCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 60907 | 0.66 | 0.687778 |
Target: 5'- gGCGGCGCCGGcGGaagcuccggcugGCGU-GCGCGuccGCUCg -3' miRNA: 3'- -UGCUGCGGUU-CC------------UGCAcCGCGC---CGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 84876 | 0.66 | 0.687778 |
Target: 5'- gGCGGCgGCCGaaagcgcggcgGGGGCG-GGCGCagaGGCg- -3' miRNA: 3'- -UGCUG-CGGU-----------UCCUGCaCCGCG---CCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 92284 | 0.66 | 0.687778 |
Target: 5'- aACGGCGCCcuGG-CGgcccucGcGCGCGGCg- -3' miRNA: 3'- -UGCUGCGGuuCCuGCa-----C-CGCGCCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 13970 | 0.66 | 0.687778 |
Target: 5'- -gGGCGCgCGGGcGGCGccGCGCGGCg- -3' miRNA: 3'- ugCUGCG-GUUC-CUGCacCGCGCCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 89022 | 0.66 | 0.687778 |
Target: 5'- -gGGCGCCGuGGACGUGaCGaCGcGCUUc -3' miRNA: 3'- ugCUGCGGUuCCUGCACcGC-GC-CGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 37648 | 0.66 | 0.687778 |
Target: 5'- gGCGGCGCUccuGGGcGACGaGGCGgCGGUg- -3' miRNA: 3'- -UGCUGCGG---UUC-CUGCaCCGC-GCCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 19048 | 0.66 | 0.687778 |
Target: 5'- -aGcCGCCAggcagGGGuACGggcuGCGCGGCUCu -3' miRNA: 3'- ugCuGCGGU-----UCC-UGCac--CGCGCCGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 80569 | 0.66 | 0.687778 |
Target: 5'- cUGGCGCUcgcgcagucucGGGGGCGUGcucGgGCGGCUg -3' miRNA: 3'- uGCUGCGG-----------UUCCUGCAC---CgCGCCGAg -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 30008 | 0.66 | 0.687778 |
Target: 5'- cACGuGCGCCAugcuGGAgCGcgccgugcUGGCGCaGCUCu -3' miRNA: 3'- -UGC-UGCGGUu---CCU-GC--------ACCGCGcCGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 119480 | 0.66 | 0.687778 |
Target: 5'- -aGACGCCcuuGGGGACGccGGCGCcGC-Cg -3' miRNA: 3'- ugCUGCGG---UUCCUGCa-CCGCGcCGaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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