miRNA display CGI


Results 81 - 100 of 544 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 131900 0.66 0.686788
Target:  5'- gACGGCGCgCAcccgcuGGACGggcuuuuUGGCGCGcGCg- -3'
miRNA:   3'- -UGCUGCG-GUu-----CCUGC-------ACCGCGC-CGag -5'
23579 5' -60.4 NC_005261.1 + 85784 0.66 0.686788
Target:  5'- gACGcGCGCCGGGGAccuCGUGGCccuggacGCGGaCg- -3'
miRNA:   3'- -UGC-UGCGGUUCCU---GCACCG-------CGCC-Gag -5'
23579 5' -60.4 NC_005261.1 + 44298 0.66 0.683816
Target:  5'- gGCGGCGCCcgcGGACGgcgcaagcccgcgGGCGCcGCg- -3'
miRNA:   3'- -UGCUGCGGuu-CCUGCa------------CCGCGcCGag -5'
23579 5' -60.4 NC_005261.1 + 82609 0.66 0.677861
Target:  5'- gACGACGCgGAGGAC---GCGCuGCUg -3'
miRNA:   3'- -UGCUGCGgUUCCUGcacCGCGcCGAg -5'
23579 5' -60.4 NC_005261.1 + 57962 0.66 0.677861
Target:  5'- uGCGcACGCCGGcGACGcaGGCGCGcGCg- -3'
miRNA:   3'- -UGC-UGCGGUUcCUGCa-CCGCGC-CGag -5'
23579 5' -60.4 NC_005261.1 + 91265 0.66 0.677861
Target:  5'- gGCGGCGgCAGcGGCGacGGCGCGGaCUg -3'
miRNA:   3'- -UGCUGCgGUUcCUGCa-CCGCGCC-GAg -5'
23579 5' -60.4 NC_005261.1 + 44020 0.66 0.677861
Target:  5'- uCGGCGCgGcGGGCGgccgccGCGCGGCg- -3'
miRNA:   3'- uGCUGCGgUuCCUGCac----CGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 96354 0.66 0.677861
Target:  5'- cUGACGCCcugacuGGCcUGGCGCGGC-Cg -3'
miRNA:   3'- uGCUGCGGuuc---CUGcACCGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 96940 0.66 0.677861
Target:  5'- -aGACGCCcacGGGCGcaucGGCGgGGCa- -3'
miRNA:   3'- ugCUGCGGuu-CCUGCa---CCGCgCCGag -5'
23579 5' -60.4 NC_005261.1 + 69209 0.66 0.677861
Target:  5'- aACGACGUCcuccGGGagcugugcGCGcUGGgGCGGUUCg -3'
miRNA:   3'- -UGCUGCGGu---UCC--------UGC-ACCgCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 119220 0.66 0.677861
Target:  5'- cAUGGCccuGCCGGGGcgaGCGUGGCcgaucGCGGC-Ca -3'
miRNA:   3'- -UGCUG---CGGUUCC---UGCACCG-----CGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 106186 0.66 0.677861
Target:  5'- -gGGCGCCGcGcGCGUGGCGCcGUUUa -3'
miRNA:   3'- ugCUGCGGUuCcUGCACCGCGcCGAG- -5'
23579 5' -60.4 NC_005261.1 + 137034 0.66 0.677861
Target:  5'- aACGGCGUCGguggAGGGCGgaccgucggcaGGCGCGGaggCg -3'
miRNA:   3'- -UGCUGCGGU----UCCUGCa----------CCGCGCCga-G- -5'
23579 5' -60.4 NC_005261.1 + 78964 0.66 0.677861
Target:  5'- gGCGAcaCGCCGugcgacGCGUGGCGcCGGCg- -3'
miRNA:   3'- -UGCU--GCGGUucc---UGCACCGC-GCCGag -5'
23579 5' -60.4 NC_005261.1 + 96318 0.66 0.677861
Target:  5'- cUGACGCCcugacuGGCcUGGCGCGGC-Cg -3'
miRNA:   3'- uGCUGCGGuuc---CUGcACCGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 119991 0.66 0.677861
Target:  5'- cCGACGCUgGAGGGCGccGGCuacGCGGC-Cg -3'
miRNA:   3'- uGCUGCGG-UUCCUGCa-CCG---CGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 19367 0.66 0.677861
Target:  5'- cCGAgGCCAGGGcCGcgGGCGCGccgccCUCc -3'
miRNA:   3'- uGCUgCGGUUCCuGCa-CCGCGCc----GAG- -5'
23579 5' -60.4 NC_005261.1 + 76741 0.66 0.674879
Target:  5'- cCGACGUgcuCGcGGACGUGGCGCaccccgcguucuucGGCg- -3'
miRNA:   3'- uGCUGCG---GUuCCUGCACCGCG--------------CCGag -5'
23579 5' -60.4 NC_005261.1 + 75218 0.66 0.667908
Target:  5'- cCGGCGCCcgc-GCG-GGCGCGGC-Cg -3'
miRNA:   3'- uGCUGCGGuuccUGCaCCGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 124166 0.66 0.667908
Target:  5'- gACGugGCCcuGGACGcGGCcugccuGCGgaccGCUCg -3'
miRNA:   3'- -UGCugCGGuuCCUGCaCCG------CGC----CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.