miRNA display CGI


Results 101 - 120 of 544 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 91600 0.66 0.667908
Target:  5'- cACGuACGUCAAGGACGgcuucuggGGCGCcuucgGGgaCg -3'
miRNA:   3'- -UGC-UGCGGUUCCUGCa-------CCGCG-----CCgaG- -5'
23579 5' -60.4 NC_005261.1 + 23232 0.66 0.667908
Target:  5'- cGCGGgGCCGGGGcCGcGGCGgcCGGCcCg -3'
miRNA:   3'- -UGCUgCGGUUCCuGCaCCGC--GCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 136845 0.66 0.667908
Target:  5'- cGCGGCGCCc--GGCGUGGCcUGGgaCg -3'
miRNA:   3'- -UGCUGCGGuucCUGCACCGcGCCgaG- -5'
23579 5' -60.4 NC_005261.1 + 34357 0.66 0.667908
Target:  5'- gACGGgGCC--GGGCGccGCGCGGCg- -3'
miRNA:   3'- -UGCUgCGGuuCCUGCacCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 48789 0.66 0.667908
Target:  5'- gGCGAuCGCCGgcuccgugAGGcCGU-GCGCGGCg- -3'
miRNA:   3'- -UGCU-GCGGU--------UCCuGCAcCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 75218 0.66 0.667908
Target:  5'- cCGGCGCCcgc-GCG-GGCGCGGC-Cg -3'
miRNA:   3'- uGCUGCGGuuccUGCaCCGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 132110 0.66 0.667908
Target:  5'- cGCGACGCgCucguGGAgCGggacGCGCGGCUg -3'
miRNA:   3'- -UGCUGCG-Guu--CCU-GCac--CGCGCCGAg -5'
23579 5' -60.4 NC_005261.1 + 46806 0.66 0.667908
Target:  5'- cGCGGCGCgCGcGGAUGgcgcgcgccaGGCGCGcguGCUCg -3'
miRNA:   3'- -UGCUGCG-GUuCCUGCa---------CCGCGC---CGAG- -5'
23579 5' -60.4 NC_005261.1 + 11068 0.66 0.667908
Target:  5'- gGCGcCGCCAgcgcgucuaGGGACGggacGGgGCGGgaCg -3'
miRNA:   3'- -UGCuGCGGU---------UCCUGCa---CCgCGCCgaG- -5'
23579 5' -60.4 NC_005261.1 + 32328 0.66 0.667908
Target:  5'- cGCGGCGCCc--GGCGUGGCcUGGgaCg -3'
miRNA:   3'- -UGCUGCGGuucCUGCACCGcGCCgaG- -5'
23579 5' -60.4 NC_005261.1 + 15027 0.67 0.661923
Target:  5'- uCGGCggguGCCGGGGGCGUagcggggggggucggGGuCGCGGCg- -3'
miRNA:   3'- uGCUG----CGGUUCCUGCA---------------CC-GCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 78709 0.67 0.661923
Target:  5'- gGCGGCGgggcugcuCCAGGGcgcGCGUgcgaccgccgccgcuGGCGCGGCg- -3'
miRNA:   3'- -UGCUGC--------GGUUCC---UGCA---------------CCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 51337 0.67 0.657928
Target:  5'- cGCGcCGCgCGcGGACcagGGCGCGGC-Ca -3'
miRNA:   3'- -UGCuGCG-GUuCCUGca-CCGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 104980 0.67 0.657928
Target:  5'- cGCGACgGCCGgcGGGA--UGGCGCGGg-- -3'
miRNA:   3'- -UGCUG-CGGU--UCCUgcACCGCGCCgag -5'
23579 5' -60.4 NC_005261.1 + 96525 0.67 0.657928
Target:  5'- cGCGAa-CCugcAGGGC-UGGaCGCGGCUCu -3'
miRNA:   3'- -UGCUgcGGu--UCCUGcACC-GCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 62521 0.67 0.657928
Target:  5'- gAUGGCGUCGAc--CGUGGCGCgcagcaGGCUCu -3'
miRNA:   3'- -UGCUGCGGUUccuGCACCGCG------CCGAG- -5'
23579 5' -60.4 NC_005261.1 + 18340 0.67 0.657928
Target:  5'- cGCGGCGCCAGGuGuacACGcccucGGCuGCGGCg- -3'
miRNA:   3'- -UGCUGCGGUUC-C---UGCa----CCG-CGCCGag -5'
23579 5' -60.4 NC_005261.1 + 105540 0.67 0.657928
Target:  5'- gGCGGgugggcuuuUGCgGAGGGCGgcgGGCGgCGGCg- -3'
miRNA:   3'- -UGCU---------GCGgUUCCUGCa--CCGC-GCCGag -5'
23579 5' -60.4 NC_005261.1 + 87506 0.67 0.657928
Target:  5'- uGCGGCGaCGAGGGCGaggaGGCGCGuuauGCgUCg -3'
miRNA:   3'- -UGCUGCgGUUCCUGCa---CCGCGC----CG-AG- -5'
23579 5' -60.4 NC_005261.1 + 48828 0.67 0.657928
Target:  5'- cACG-CGCCGAGGAa--GGCcgGCGGCa- -3'
miRNA:   3'- -UGCuGCGGUUCCUgcaCCG--CGCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.