miRNA display CGI


Results 41 - 60 of 544 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 12409 0.7 0.471502
Target:  5'- cACGACGgagcccuCCAGGGGCGgcggagGGCuuGCGGCgUCg -3'
miRNA:   3'- -UGCUGC-------GGUUCCUGCa-----CCG--CGCCG-AG- -5'
23579 5' -60.4 NC_005261.1 + 12915 0.66 0.69765
Target:  5'- -gGACGCCGAGGcCGcGGagcgccCGCGGgUCc -3'
miRNA:   3'- ugCUGCGGUUCCuGCaCC------GCGCCgAG- -5'
23579 5' -60.4 NC_005261.1 + 13075 0.68 0.56811
Target:  5'- cGCGucCGCCGGcccgucggcGGGCGgcgGGCuCGGCUCg -3'
miRNA:   3'- -UGCu-GCGGUU---------CCUGCa--CCGcGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 13681 0.69 0.509847
Target:  5'- cGCGGgGCgCGcGGGCGUGGgGCGGggCg -3'
miRNA:   3'- -UGCUgCG-GUuCCUGCACCgCGCCgaG- -5'
23579 5' -60.4 NC_005261.1 + 13970 0.66 0.687778
Target:  5'- -gGGCGCgCGGGcGGCGccGCGCGGCg- -3'
miRNA:   3'- ugCUGCG-GUUC-CUGCacCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 14099 0.74 0.282987
Target:  5'- cGCGGuCGUCGAGGcagACG-GGCGuCGGCUCg -3'
miRNA:   3'- -UGCU-GCGGUUCC---UGCaCCGC-GCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 14965 0.66 0.687778
Target:  5'- gGCG-UGCCuGGGGCGacuGCGCGGC-Cg -3'
miRNA:   3'- -UGCuGCGGuUCCUGCac-CGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 15027 0.67 0.661923
Target:  5'- uCGGCggguGCCGGGGGCGUagcggggggggucggGGuCGCGGCg- -3'
miRNA:   3'- uGCUG----CGGUUCCUGCA---------------CC-GCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 15214 0.66 0.69765
Target:  5'- cCGACGCuCGcGGACGccacGGCcGCGGC-Cg -3'
miRNA:   3'- uGCUGCG-GUuCCUGCa---CCG-CGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 15275 0.75 0.223817
Target:  5'- gGCGGCGCCGccGGGGCGcgcGGuCGCGGcCUCc -3'
miRNA:   3'- -UGCUGCGGU--UCCUGCa--CC-GCGCC-GAG- -5'
23579 5' -60.4 NC_005261.1 + 15437 0.69 0.509847
Target:  5'- cGCGGCucuCUAAGGACGccgucUGGCGCgcggucaucGGCUCg -3'
miRNA:   3'- -UGCUGc--GGUUCCUGC-----ACCGCG---------CCGAG- -5'
23579 5' -60.4 NC_005261.1 + 15505 0.7 0.453334
Target:  5'- aGCGGCGCCGAcgugaacaucgacGGcGCGgccggcGGCGCGGCg- -3'
miRNA:   3'- -UGCUGCGGUU-------------CC-UGCa-----CCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 15845 0.69 0.500368
Target:  5'- cGCGAgCGCgcuaGAGGACGaGGuCGCGGCa- -3'
miRNA:   3'- -UGCU-GCGg---UUCCUGCaCC-GCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 16150 0.67 0.611882
Target:  5'- cCGAUGCCgAccggcagggcaguagGGGGCGcgGGCGUGGCg- -3'
miRNA:   3'- uGCUGCGG-U---------------UCCUGCa-CCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 16261 0.66 0.70747
Target:  5'- -gGGcCGCCGGGGcCG-GGCuuCGGCUCg -3'
miRNA:   3'- ugCU-GCGGUUCCuGCaCCGc-GCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 16422 0.66 0.70747
Target:  5'- -aGAgGCCcccucGACGgcgGGCgGCGGCUCg -3'
miRNA:   3'- ugCUgCGGuuc--CUGCa--CCG-CGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 16607 0.69 0.509847
Target:  5'- gGCGGcCGCCGAGcGGCGggaGGCGgCGGUg- -3'
miRNA:   3'- -UGCU-GCGGUUC-CUGCa--CCGC-GCCGag -5'
23579 5' -60.4 NC_005261.1 + 16644 0.7 0.445283
Target:  5'- aACGAgGCCGAGGGCGaGaGCGaGGcCUCg -3'
miRNA:   3'- -UGCUgCGGUUCCUGCaC-CGCgCC-GAG- -5'
23579 5' -60.4 NC_005261.1 + 17169 0.67 0.607882
Target:  5'- cGCGGCGC---GGGCGUGGgcagcccugcCGCGGCg- -3'
miRNA:   3'- -UGCUGCGguuCCUGCACC----------GCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 17631 0.75 0.251975
Target:  5'- cACGGCGCCGAGGcCGcaGGCGaCGGC-Ca -3'
miRNA:   3'- -UGCUGCGGUUCCuGCa-CCGC-GCCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.