miRNA display CGI


Results 61 - 80 of 544 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 17840 0.66 0.69765
Target:  5'- -aGACGCCGcucugcucGGuGCGcgagGGCGCGGCg- -3'
miRNA:   3'- ugCUGCGGU--------UCcUGCa---CCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 18340 0.67 0.657928
Target:  5'- cGCGGCGCCAGGuGuacACGcccucGGCuGCGGCg- -3'
miRNA:   3'- -UGCUGCGGUUC-C---UGCa----CCG-CGCCGag -5'
23579 5' -60.4 NC_005261.1 + 18912 0.68 0.597896
Target:  5'- gGCGGgGgCAAGGGCGagGGCGaGGcCUCg -3'
miRNA:   3'- -UGCUgCgGUUCCUGCa-CCGCgCC-GAG- -5'
23579 5' -60.4 NC_005261.1 + 19048 0.66 0.687778
Target:  5'- -aGcCGCCAggcagGGGuACGggcuGCGCGGCUCu -3'
miRNA:   3'- ugCuGCGGU-----UCC-UGCac--CGCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 19367 0.66 0.677861
Target:  5'- cCGAgGCCAGGGcCGcgGGCGCGccgccCUCc -3'
miRNA:   3'- uGCUgCGGUUCCuGCa-CCGCGCc----GAG- -5'
23579 5' -60.4 NC_005261.1 + 19614 0.68 0.56811
Target:  5'- cGCGGCgGCCAGGGcaACGgccgacaGCGCGaGCUCc -3'
miRNA:   3'- -UGCUG-CGGUUCC--UGCac-----CGCGC-CGAG- -5'
23579 5' -60.4 NC_005261.1 + 20486 0.66 0.70747
Target:  5'- uCGGCGUUggGGGCGgcggcgccaGcGCGCGGC-Cg -3'
miRNA:   3'- uGCUGCGGuuCCUGCa--------C-CGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 20540 0.67 0.647928
Target:  5'- gACcGCGCUcugcuGGACGUGGCGgCgGGCUg -3'
miRNA:   3'- -UGcUGCGGuu---CCUGCACCGC-G-CCGAg -5'
23579 5' -60.4 NC_005261.1 + 20582 0.67 0.627899
Target:  5'- -gGGCGCUuagcggGGGGGCGcGGCGCGGg-- -3'
miRNA:   3'- ugCUGCGG------UUCCUGCaCCGCGCCgag -5'
23579 5' -60.4 NC_005261.1 + 20962 0.69 0.500368
Target:  5'- uACGAgGUCGuGGAcCGcGGCGCGGCg- -3'
miRNA:   3'- -UGCUgCGGUuCCU-GCaCCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 21875 0.66 0.717229
Target:  5'- cGCGGCGgCAcGGACGaacccgcacggGGCGauggGGCUCu -3'
miRNA:   3'- -UGCUGCgGUuCCUGCa----------CCGCg---CCGAG- -5'
23579 5' -60.4 NC_005261.1 + 22055 0.69 0.500368
Target:  5'- gGCGGgGuUCAGGGGCuccGGCGgGGCUCg -3'
miRNA:   3'- -UGCUgC-GGUUCCUGca-CCGCgCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 22058 0.72 0.376658
Target:  5'- aGCGGCGUCGGGGACGcGGCcgcgaccGCGcGCUg -3'
miRNA:   3'- -UGCUGCGGUUCCUGCaCCG-------CGC-CGAg -5'
23579 5' -60.4 NC_005261.1 + 22186 0.7 0.472421
Target:  5'- -gGGCGCCAAGGccauCGUGGCGCa---- -3'
miRNA:   3'- ugCUGCGGUUCCu---GCACCGCGccgag -5'
23579 5' -60.4 NC_005261.1 + 22671 0.71 0.41904
Target:  5'- gGCGGCGCCcgagugccgccgGGGGACG-GGCcCGGCg- -3'
miRNA:   3'- -UGCUGCGG------------UUCCUGCaCCGcGCCGag -5'
23579 5' -60.4 NC_005261.1 + 22735 0.67 0.607882
Target:  5'- --aGCGCCAGucGGGCGcGGgGCGGCg- -3'
miRNA:   3'- ugcUGCGGUU--CCUGCaCCgCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 22967 0.69 0.500368
Target:  5'- gACGAgGCCGAGGAcCGggaGGagGCGGCg- -3'
miRNA:   3'- -UGCUgCGGUUCCU-GCa--CCg-CGCCGag -5'
23579 5' -60.4 NC_005261.1 + 23019 0.66 0.717229
Target:  5'- cACGaucGCGCCGcGGACGcacgGGCGCugGGC-Cg -3'
miRNA:   3'- -UGC---UGCGGUuCCUGCa---CCGCG--CCGaG- -5'
23579 5' -60.4 NC_005261.1 + 23232 0.66 0.667908
Target:  5'- cGCGGgGCCGGGGcCGcGGCGgcCGGCcCg -3'
miRNA:   3'- -UGCUgCGGUUCCuGCaCCGC--GCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 23547 0.67 0.656929
Target:  5'- gGCGGCaggaGCCGucgcagguggggcAGGGC-UGGcCGUGGCUCa -3'
miRNA:   3'- -UGCUG----CGGU-------------UCCUGcACC-GCGCCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.